Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1560 ATGTCTGCGGGGACATCCTATTTTTGGTGCTATAGATGTAGTCGATTCGTCAGGGTATCGCGGCAGGATCCGGTGCTTTGTCCGGATTGTGACAGTGGGTTTGTGGAAGAGATTGAACATCCGCCTCGGCCTGTGCAGGCAGATGCGCGGAGGCGGAGGTTTCCGGCAGCCGCGATGTACATGATAGGCCACCGCCCTAGTTCTGATCAGAACTCGCGGCCACCGCTTCGGAGGACCCGTAGGAACGGAGGTGATCGTTCGCCATACAATCCGGTCATCGTGCTTCGTGGATCGCCTGATCGGTCGAGCCACGAGGGGGGAGAGAGTCGTGGGTTTGAGCTTTATCACGACGACGGTGCTGGTTCTGGACTTCGGCCTTTGCCGCCGAGCATGTCGGAGTTTCTTTTGGGATCTGGATTCGACAGGCTTTTGGAACAGCTTTCCCAGATCGAAATAAACGGTATTGGGCGTTGCGAGCACCCTCCGGCATCAAAGGCTGCGATTGATTCGTTACCCACGATTGAGATTGATCAGAGTCATTTGGCCACGGAATCTCATTGTGCCGTTTGCAAGGAGCCTTTTGAATCGGGCACCGCAGCTAGAGAAATGCCATGTAAACACATATACCATCCCGAATGTATTCTACCATGGCTCGCGCTTCGCAATTCTTGCCCTGTTTGTCGCCATGAATTACCATCTGATAATACCCTGAACGCTGGCCCAACAGCACAATCCCTTGCGTGGAACGATGAAGAGAACGTGGGCTTGACAATTTGGAGGCTGCCAGGAGGTGGGTTTGCAGTGGGGAGGTTTTCTGGCGGAAGAAGAGGAGCAGAGAGGGAGCTTCCCGTTGTCTACACTGAAATGGATGGTGGATTTAACAATGGTGGTGAGCCAAGGAGGATTTCGTGGTCTTCTAGAGGTAATAGAGGGATGGAAAGTGGTGGATTGCGCAGAATGCTTCGCAATTTGTTCGGTTGCTTTGGAGGAGGAGTTAGATCTCAGCCTTCTCATTTTAGAGAATCTCAACCTGTAAGGATTTCATCTCATTCGGATTTGAATACTTCTCCGCGCTCACGTAGGACTTGGTCCATGGAAGTAAACAGTGGAATAAGATCATGGTAG 1125 0.5191 MSAGTSYFWCYRCSRFVRVSRQDPVLCPDCDSGFVEEIEHPPRPVQADARRRRFPAAAMYMIGHRPSSDQNSRPPLRRTRRNGGDRSPYNPVIVLRGSPDRSSHEGGESRGFELYHDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRCEHPPASKAAIDSLPTIEIDQSHLATESHCAVCKEPFESGTAAREMPCKHIYHPECILPWLALRNSCPVCRHELPSDNTLNAGPTAQSLAWNDEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGMESGGLRRMLRNLFGCFGGGVRSQPSHFRESQPVRISSHSDLNTSPRSRRTWSMEVNSGIRSW 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1560 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Dere04g1560 374 SUPERFAMILY RING/U-box 167 234 - -
Dere04g1560 374 SMART ring_2 187 227 IPR001841 -
Dere04g1560 374 MobiDBLite consensus disorder prediction 335 361 - -
Dere04g1560 374 Pfam zinc-ribbon 8 38 IPR039525 GO:0061630
Dere04g1560 374 Pfam Protein of unknown function (DUF1117) 254 343 IPR010543 -
Dere04g1560 374 Pfam Ring finger domain 186 228 IPR001841 -
Dere04g1560 374 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Dere04g1560 374 FunFam E3 ubiquitin-protein ligase RING1-like 149 234 - -
Dere04g1560 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 232 - -
Dere04g1560 374 MobiDBLite consensus disorder prediction 336 361 - -
Dere04g1560 374 MobiDBLite consensus disorder prediction 60 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1560 Dere-ChrDere04 17293812 17294936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1560 126 235 C3H Transcription Factor Family AT5G01980 41.818 5.12e-24 101