Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1547 ATGGCGAATCGGTGGTGGGCTGGAAATATCGCAATGAGACCGACCGACCCCATGTCGTCTTCTCCGTTACTTCAGCTCAGAAACCCAGAAGACGACCATGGCGGATTGAATCGTCTTGGGCCTAGACGAGAGCAAGAATTCATGGACAACAACACCAACGCCACGCCAACTAATAGCAGCAACAGCAACACAAACCCAAATGCCCACAACGCGGAAGATAACGATAGCCGCGAAGCCGAAGACCAAAACCCAGGAAGCCATGAAACGGTTGAGCCTGGTAGCAGCGGCCGGCGGCCACGGGGCCGGCCCCCGGGGTCGAAGAACAAGCCAAAACCCCCTATCGTTATAACCAAAGAAACCCCCAACGCGCTTCGAAGCCATGTGCTGGAAATCAGCAGTGGCAGCGATGTTGCCGAGAGCATTGCCACCTTTGCGAACCGCCGGCACCGGGGGGTATCTGTGCTTAGCGGAAGCGGCATTGTGACCAATGTCACGCTTCGGCAACCAGCGGCACCTGGTGGGGTAATCACGCTTAATGGAAGGTTCGAGATATTGTCTCTGTCCGGCGCGTTCTTGCCGGCGCCTTCGCCGCCGGGGGCCACCGGGCTAACGGTGTATTTAGCGGGCGGACAAGGGCAGGTTGTTGGGGGTACGGTGGTGGGTTCTCTGGTAGCATCGGGGCCTGTGATGGTGATCGCAGCTACATTTTCTAATGCTACTTATGAGAGGCTGCCATTAGACGAAGAGGCAGGTGGTGAGGAAATGCAAGTGCAGCAGCAGCAATCCGGAGTGAATTCAGGAACTACTGGAACTTCGGCATCACAAGGCTTGGGTGAACAAGTTTCAATGCCCATGTACAATTTACCACCAAATTTGCTATCAAATGGTCAAATGCCCCACGATGTGTTTTGGGGTCCTCCACCACGCCCTCCTCCCCCATCTTACTGA 948 0.5559 MANRWWAGNIAMRPTDPMSSSPLLQLRNPEDDHGGLNRLGPRREQEFMDNNTNATPTNSSNSNTNPNAHNAEDNDSREAEDQNPGSHETVEPGSSGRRPRGRPPGSKNKPKPPIVITKETPNALRSHVLEISSGSDVAESIATFANRRHRGVSVLSGSGIVTNVTLRQPAAPGGVITLNGRFEILSLSGAFLPAPSPPGATGLTVYLAGGQGQVVGGTVVGSLVASGPVMVIAATFSNATYERLPLDEEAGGEEMQVQQQQSGVNSGTTGTSASQGLGEQVSMPMYNLPPNLLSNGQMPHDVFWGPPPRPPPPSY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1547 315 MobiDBLite consensus disorder prediction 254 275 - -
Dere04g1547 315 MobiDBLite consensus disorder prediction 46 70 - -
Dere04g1547 315 MobiDBLite consensus disorder prediction 1 116 - -
Dere04g1547 315 SUPERFAMILY AF0104/ALDC/Ptd012-like 122 250 - -
Dere04g1547 315 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 60 305 IPR014476 GO:0003680
Dere04g1547 315 CDD DUF296 125 208 IPR005175 -
Dere04g1547 315 FunFam AT-hook motif nuclear-localized protein 124 251 - -
Dere04g1547 315 MobiDBLite consensus disorder prediction 31 45 - -
Dere04g1547 315 MobiDBLite consensus disorder prediction 71 85 - -
Dere04g1547 315 MobiDBLite consensus disorder prediction 250 275 - -
Dere04g1547 315 Gene3D - 124 265 - -
Dere04g1547 315 Pfam Plants and Prokaryotes Conserved (PCC) domain 125 238 IPR005175 -
Dere04g1547 315 ProSiteProfiles PPC domain profile profile. 121 258 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1547 Dere-ChrDere04 17180534 17181481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1547 1 315 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 52.615 6.22e-78 238