Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1542 ATGAAGGAATCTCAGTTCTTGATGTGGATGAAGAGAGGACAAATGTTGAAGTCCTGTATTCAGGTACCGCCAGTTGGAGGCTGCAACAGGTCATGGGAAGAAAGAGCTTTTGCAGAAGACACGGCTAGGATACTTGGAGTTGGTGGGTGCACATGGCCTCCGCGATCTTATTCTTGTACTTTCTGTAAAAGAGAGTTCAGGTCTGCTCAAGCTCTAGGCGGTCACATGAATGTCCACAGAAGAGACAGAGCTAGGCTTAAACAAAATCTTAACCCCCCTAATGATTGTGAGTCATTAGGAGCTCAATTTTCTTCAGAGATCTGCTCTCAGCTAGATTCTTTTCTTAATCCTAATAGTACTATTACCACAAGCACCCTTTCGCCTTCGAGGTTCTCGTCAGCTATACCTGCCCAAGAAAACTGTGTTCAGCAAAAGATAGTTCCTTGTTCTGCTTCGATAAGCTGGGTGCAGCAGAATTGTCCAAACTATTCAGAATCAGATGGTTGTAAAGGGCTGAGTTGTGATCATGTTGAAACAGATTTATCTGTGGGATTGAATTCCATGTTTGGCCAAAAACTACCAAGTGGATCGTCACATGGAGACGAAGGAGCCATCAGTTGTAAGAGACCCAAGACTTCATTTTCTTCACGGAAGCCATGTTCAAATGACAGGCTCCTGGCTTTCCATTCTGCAGAAATTGTACTTGGACTTAAGCCTGGTATGGAAGACTTGGATCTTGAACTCAGACTGGGGAAACCACAGAAAGTTAAGTAG 774 0.4406 MKESQFLMWMKRGQMLKSCIQVPPVGGCNRSWEERAFAEDTARILGVGGCTWPPRSYSCTFCKREFRSAQALGGHMNVHRRDRARLKQNLNPPNDCESLGAQFSSEICSQLDSFLNPNSTITTSTLSPSRFSSAIPAQENCVQQKIVPCSASISWVQQNCPNYSESDGCKGLSCDHVETDLSVGLNSMFGQKLPSGSSHGDEGAISCKRPKTSFSSRKPCSNDRLLAFHSAEIVLGLKPGMEDLDLELRLGKPQKVK 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1542 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Dere04g1542 257 Pfam C2H2-type zinc finger 57 81 - -
Dere04g1542 257 SUPERFAMILY beta-beta-alpha zinc fingers 54 83 IPR036236 -
Dere04g1542 257 SMART c2h2final6 57 79 IPR013087 -
Dere04g1542 257 PANTHER OS07G0101800 PROTEIN 29 254 - -
Dere04g1542 257 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Dere04g1542 257 Gene3D Classic Zinc Finger 50 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1542 Dere-ChrDere04 17099652 17100425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1542 33 256 C2H2 Transcription Factor Family AT5G06070 38.655 4.61e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere04g1542 zf-C2H2_6 1.4e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1542 04 17099652 17100425 Dere04g1542 04 17099652 17100425 ECH