LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g1530	ATGCAAGTTGGCCTTCTGGCGATATGCCTTTTAAATGCAGATTTTAGTGTTTCTCATTTCTTGTTCCAGAGTACACCGTCGGTTGAAGCCTTTGATTATGGATCACAATATTCTGGTATTAAATTTCTAATGCTTTGTATTGGTCAAGCCCCAACTTCTACCTTCACCCTACGCACATTAAAGATATATAGTCACCAAGAAACGCATAATGGTCTTGTCTGCATTTCTGTCAGCGTGCTCCCGATGGAAGCGACGTCCTCCTATAAGCTCCTCCTCTTCACGGCGGCGCTGCTAACCTGCGCCGGATACGGATTGTCCCTCACGCGCTGCCCTAACTGCGGTAACGCCTCCGTGCCCTACCCACTCAGCACCGCACCCACCTGTGGTGACCCGAACTACCAGATCAGGTGTAGCTCCGGCTCACTCATATTCGACACCCTCAACAACTCCTACCCCATCGAGTCCATCAACCAGCAAACCCAACGCCTCGTGATCCGACCCGCCTCCCTCATACGCAACACCTGCGTCACAACCGATAAAATCCACCAGGGCATCCAGCTCAACAATACCCTCCCCTTCAACATCACCAGCGGCAACACCATCGTCTACCTCAACTGTACGGACACGCTTCTCCAGTCGCCCCTGAATTGCTCGTCCGCGAGTTTGTGTCACACCTACATCAACGGCACCGGAGACGCGAGTCCCTGCCAGAACACGCCTTTGTGTTGTACTTTCAGGGCCGGCGGGTCCAGCAACTCGTACATGATTCGGGTCCGGGATGTGGGATGCAGCGCTTACTCGAGTTTTGTGAACTTGGACCCGGCTCTGCCGTTGAACCGATGGCCCCAACCCGGTTTGGAGATTCAGTGGGTGTCGCCGCCGGAACCCATCTGTGGGTCCCAGGTGGATTGTGAGGGTGGGAACTCCACTTGCAGGTCGGACTCGTCGGGGAATGGGATCAGGAGGTGCTTCTGTAACACTGGGCTCGTGTGGGACCCTATCCATGGGGTGTGCTCTGAAAAAATTACGTGTCAAAGTCCGGATGGCTGTGGCGGCTCGTCAGATCGAACTGCACTTGTAGCAGGTTTAACGAGTGGGATTGGTGCAGCACTCATAGTAGCCATTATTGTTGTTCTACTCTACAGACGACACAGACGTATCAAGGAAGCACGAGAACGCCTAGCCAGAGAGCGCGAGGGCATCCTGAATGCAAGTGGGGGAGGCAGAGCCGCCAAGCTCTTCTCCGGCAAAGAACTCAAGAAAGCCACGAACGACTTCTCCAGAGACCGTCTCCTCGGCGCCGGCGGCTACGGCGAAGTTTACAAAGGTGTTCTCCAAGACGGCACTGTCGTGGCCGTCAAATGCGCAAAACTCGGCAACGCCAAAGGCACCGACCAAGTCCTAAACGAGGTTCGCATACTATGCCAAGTCAACCACCGCAACCTCGTCGGTCTTCTCGGCTGCTGCGTGGAGTTAGAGCAACCCACAATGGTCTATGAGTTCATAGAGAACGGAACTCTCCTCGATCACTTGCAAGCACGTAATACGGCCAAAGGGCGTGGCTTTCTCAGTTGGACTCATCGCCTTCAAATTGCCCGCGACACAGCCCAAGGTCTCGCGTACCTTCACTTCTCGGCTGTGCCTCCTATATACCACAGAGACGTCAAGTCCAGTAACATTCTGCTAGACAACAAATTAAATGCTAAGGTTTCGGATTTTGGCTTGTCAAGGTTGGCTGAAACTGATTTGAGCCATATCTCAACTTGTGCTCAGGGGACTCTCGGGTACTTAGATCCTGAGTATTATAGGAATTACCAGTTGACAGATAAAAGCGATGTTTATAGTTTTGGGGTGGTGTTGTTGGAGCTTTTGACGGCGCAGAGAGCTATAGATTTTAGCAGGGCAGCGGATGACGTGAATTTGGCTGTTTATGTGCAGAGGATGGTGGAGGAAGAGAAGTTGATGGATGTGATCGACCCAATGTTGAAAGATGGAGCTACCACTTTGGAACTGGAGACTATGAAGGCTTTGGCTCTTTTGGCTTTGGCATGCTTGGAGGAACGCAGACAGAACCGACCTTCAATGAAAGAGGTAGGGGAGGAGATTGAGTATATCATTAGTATTGCCACAGCAAAAGATGCTCCAATGTAG	2151	0.5212	MQVGLLAICLLNADFSVSHFLFQSTPSVEAFDYGSQYSGIKFLMLCIGQAPTSTFTLRTLKIYSHQETHNGLVCISVSVLPMEATSSYKLLLFTAALLTCAGYGLSLTRCPNCGNASVPYPLSTAPTCGDPNYQIRCSSGSLIFDTLNNSYPIESINQQTQRLVIRPASLIRNTCVTTDKIHQGIQLNNTLPFNITSGNTIVYLNCTDTLLQSPLNCSSASLCHTYINGTGDASPCQNTPLCCTFRAGGSSNSYMIRVRDVGCSAYSSFVNLDPALPLNRWPQPGLEIQWVSPPEPICGSQVDCEGGNSTCRSDSSGNGIRRCFCNTGLVWDPIHGVCSEKITCQSPDGCGGSSDRTALVAGLTSGIGAALIVAIIVVLLYRRHRRIKEARERLAREREGILNASGGGRAAKLFSGKELKKATNDFSRDRLLGAGGYGEVYKGVLQDGTVVAVKCAKLGNAKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPTMVYEFIENGTLLDHLQARNTAKGRGFLSWTHRLQIARDTAQGLAYLHFSAVPPIYHRDVKSSNILLDNKLNAKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQRAIDFSRAADDVNLAVYVQRMVEEEKLMDVIDPMLKDGATTLELETMKALALLALACLEERRQNRPSMKEVGEEIEYIISIATAKDAPM	716

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g1530	716	SMART	serkin_6	426	705	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g1530	716	SUPERFAMILY	Protein kinase-like (PK-like)	411	700	IPR011009	-
	Dere04g1530	716	Pfam	Wall-associated receptor kinase galacturonan-binding	110	165	IPR025287	GO:0030247
	Dere04g1530	716	FunFam	Wall-associated receptor kinase-like 20	502	714	-	-
	Dere04g1530	716	Pfam	Protein tyrosine and serine/threonine kinase	429	701	IPR001245	GO:0004672\|GO:0006468
	Dere04g1530	716	Gene3D	Transferase(Phosphotransferase) domain 1	502	714	-	-
	Dere04g1530	716	ProSiteProfiles	Protein kinase domain profile.	426	705	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g1530	716	FunFam	Wall-associated receptor kinase-like 20	388	501	-	-
	Dere04g1530	716	ProSitePatterns	Protein kinases ATP-binding region signature.	432	454	IPR017441	GO:0005524
	Dere04g1530	716	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	550	562	IPR008271	GO:0004672\|GO:0006468
	Dere04g1530	716	CDD	TM_EGFR-like	357	389	-	-
	Dere04g1530	716	Gene3D	Phosphorylase Kinase; domain 1	390	501	-	-
	Dere04g1530	716	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	108	705	IPR044652	GO:0004672
	Dere04g1530	716	CDD	STKc_IRAK	432	703	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g1530	Dere-ChrDere04	17004562	17010176	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g1530	82	708	Receptor kinase-like Gene Family	AT5G02070	51.908	0.0	676

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Dere04g1530		PK_Tyr_Ser-Thr	1.7e-45	CL0016