Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1522 ATGGCAGACATCCGCTTTAGAGATCAAAATAAGACAGATATGTTCTTTATCCTGATGAAACAGATTCGCTCCTCGCCCACTTTCTTCATTGCTTTCCAAGCCAAGAATCCCTTTCTCTATCTTTTTCATCCACTATTAAGATGGTCTAATAGTACTTCTGTTTCCCTCTGCTCCCCTGTCCCTCTCTCTGCGTCGTTTTCAATTTTCGTGCTTCCTTTTGGTTCCCTCGGGTCTCACATTAAGCGAAAGCCATACATAAGTAAGCTTTTCAAAGGCGGGTCCAGTCGTGGAAGGGGAGGTCGTCGTCTACAACAGCCCGCTCCAGCTAGATCGTTGGATGACAGCGCTGGAACTCAAAGGGAGAAGGAGGATCTAGACCATGAACTTGCACTTTCTTTAGCTGAAGATCTGAAGAGACCAAATGGCAAATGGCGGACTGACACTGATGAAGATTATTCAAGGGCACTTCATGAAAGCCTGAACTCATCTGCACATCCTCCATATGCCCCTATGCCATTTTATCCTAGGGGACATGGGATATGTGGCGGCTGCAACCAGGAAATTATCTACGGCAATTTTTTGGAATGCAAGGGCACTCATTTTCATCCAAACTGCTTTTGTTGTCACTCTTGTCGTTACCCCATTACGGAGCGTGAGATCCCTATAAATGCTGCTGGTTTGATTGAATATCGATGCCATCCCTTTTGGTCACAAAAGTATTGTCCATCTCACGAATATGATTATACACCTCGCTGCTGTAGTTGCGAAAGATTGGAGTCTTGGAAAGAAAAATATTATAGACTGGAAGATGGACGGAGTTTGTGCTTGGAGTGCATGGAATCGGCTATAATGGATACTGGAGATTGTCAACCTCTCTATCATGCTATCAGAGATTATTATGAAGGAATGAATATGAGAATAGATCAGCAAATTCCCATGCTTCTGGTTGAGAGAGAAGCACTCAATGAAGCTATTGTGGGGGAAAAAAATGGTTTCCATCACTTGCCAGAGACAAGGGGCTTATGCCTGTCAGAAGAGCAGACCGTACAAAGAAGGCCAAGAATTGGAGGTCATCGATTGACAGGGATGAGAACTCAGTCTCAAAAGCTAACTAGGAAATGTGAAGTTACAGCCATTCTTGTTATCTACGGTCTTCCCAGGTTACTGACTGGTGCTATTCTTGCCCATGAGTTGATGCATGCCTGGTTACGCCTAAAAGGTTACCGCAACCTTGATCCTGACGTAGAGGAAGGTATCTGTCAGGTTCTCTCACATATGTGGCTTGAGTCAGAAGTGATGCCAACCTTCAGAAGCATGCCACCAACATCCTCAGCTTCTTCTTCATCCTTCCCATCGAAGAAAGGTGCAAAATCTCAAGTTGAGAATAAACTGGGCAAATTTTTCATAAACCAGATCGTGAATGATTCTTCCCCAGCTTATGGAGATGGCTTCAGAGCTGCTAATGCAGCTGTCAATAAATATGGTTTGCGTTCTACACTCGAGCATATTCGTTTGACTGGTAATTTCCCACTCTAA 1536 0.4414 MADIRFRDQNKTDMFFILMKQIRSSPTFFIAFQAKNPFLYLFHPLLRWSNSTSVSLCSPVPLSASFSIFVLPFGSLGSHIKRKPYISKLFKGGSSRGRGGRRLQQPAPARSLDDSAGTQREKEDLDHELALSLAEDLKRPNGKWRTDTDEDYSRALHESLNSSAHPPYAPMPFYPRGHGICGGCNQEIIYGNFLECKGTHFHPNCFCCHSCRYPITEREIPINAAGLIEYRCHPFWSQKYCPSHEYDYTPRCCSCERLESWKEKYYRLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMRIDQQIPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVQRRPRIGGHRLTGMRTQSQKLTRKCEVTAILVIYGLPRLLTGAILAHELMHAWLRLKGYRNLDPDVEEGICQVLSHMWLESEVMPTFRSMPPTSSASSSSFPSKKGAKSQVENKLGKFFINQIVNDSSPAYGDGFRAANAAVNKYGLRSTLEHIRLTGNFPL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1522 511 ProSitePatterns LIM zinc-binding domain signature. 181 215 IPR001781 -
Dere04g1522 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 174 206 - -
Dere04g1522 511 MobiDBLite consensus disorder prediction 91 121 - -
Dere04g1522 511 SMART lim_4 180 244 IPR001781 -
Dere04g1522 511 CDD LIM_DA1 181 233 - -
Dere04g1522 511 ProSiteProfiles LIM domain profile. 179 251 IPR001781 -
Dere04g1522 511 PANTHER PROTEIN DA1-RELATED 2 107 510 IPR045218 -
Dere04g1522 511 Pfam Protein DA1 302 506 IPR022087 -
Dere04g1522 511 Gene3D Cysteine Rich Protein 178 249 - -
Dere04g1522 511 Pfam LIM domain 181 223 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1522 Dere-ChrDere04 16939727 16944660 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere04g1522 DA1-like 1.4e-93 CL0126