Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1490 ATGGTGATTGCTGACACGCCTCGTGTTATTGATATAGAGAATGGTTGTCCACGGAGCTCCGTCGTCACCGGCAGTGAAGGGTATACTTCAGAGAGCAGTGACAGGTCCGATGCGGAGATTGTGGGAGGGTCCGAAAACGGAAGGGGATCCTCTTTGTCGGAGTGTTCGGTGGAGGTGGATCTGGGCAGTGCTGTAGCTGAGGTTAAGGTACATTTGGGTAAGGTGGAGAGGGATTGTAGGATTTGTCATCTGAGCATGGATATGACCAATCATGAATCTGGGACCTCCATTGAGCTGGGATGTTCTTGCAAGGATGATTTGGCTGCTGCCCACAAACACTGTGCTGAGACTTGGTTCAAGATCAAGGGTAACAAAACCTGTGAAATCTGTGGATCAATTGCACACAATGTTGCTGGTGCTTTTGGAGTTGAAACGATAGAACAATGGAATGAGGCAAATGACGCCTCCATGGTACCACCAACTGGACATGTGACCCCTTCAGAAACTCGAAATTTCTGGCAAGGCCACCGCTTCTTGAATTTTCTGCTTGCCTGCATGGTCTTTGCCTTTGTCATTTCTTGGCTTTTTCACTTCAATGTGCCCTCATGA 609 0.4844 MVIADTPRVIDIENGCPRSSVVTGSEGYTSESSDRSDAEIVGGSENGRGSSLSECSVEVDLGSAVAEVKVHLGKVERDCRICHLSMDMTNHESGTSIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICGSIAHNVAGAFGVETIEQWNEANDASMVPPTGHVTPSETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1490 202 SMART ringv_2 78 131 IPR011016 GO:0008270
Dere04g1490 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 139 IPR013083 -
Dere04g1490 202 PANTHER ZINC FINGER, RING-CH-TYPE 34 201 - -
Dere04g1490 202 MobiDBLite consensus disorder prediction 20 50 - -
Dere04g1490 202 MobiDBLite consensus disorder prediction 20 39 - -
Dere04g1490 202 Pfam RING-variant domain 79 130 IPR011016 GO:0008270
Dere04g1490 202 SUPERFAMILY RING/U-box 76 133 - -
Dere04g1490 202 ProSiteProfiles Zinc finger RING-CH-type profile. 71 137 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1490 Dere-ChrDere04 16476530 16478898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1490 8 202 C3H Transcription Factor Family AT5G05830 59.184 1.28e-71 214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1490 04 16476530 16478898 Dere04g1490 04 16476530 16478898 ECH