Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1489 ATGACTGAAGGAGACCGTACCGACTCTGCCTCTCCCTCCCTCGAGCCTCCCCACAATGGCGTCGCCGATTCGGAACTCGCCAGTGGTGCCGACTTGGAACCCGCGGTCGGCGATGCTGACTCGTCGGGACTTGGAGATGGAAAAGTTGCCGGTAGAGTGAAGGGACCATGGTCTCCGGAGGAGGACGCCGTTCTCAGTCGATTGGTTAGCAAGTTTGGGGCTAGGAATTGGAGCATGATCGCGCGAGGAATACCCGGTCGCTCTGGAAAGTCGTGCCGTCTCCGGTGGTGTAATCAGCTTGACCCCTGTGTTAAACGCAAGCCCTTTACTGAGCAAGAGGATCGTATTATAGTTGCAGCCCATGCAATGCATGGAAACAAATGGGCAGCAATTGCAAGGCTTCTTCCAGGCAGAACAGATAATGCAATAAAGAATCACTGGAATTCTACACTTAAGCGTAGGTGCATGGATCTGGGAAGACATGTTCCAGTGGGTGCTGACATGATGGAAGATGGCAGTGTTGAGGCCCCTGACAAAACAAAGGCATCCTCTGATGAAACTATGTCAGTTGGGGATATCAATTCATTAAATCCCACGCAAGTTAAAAGTGTCATTATGGATAGCGGAATTATGCATTATGAAGATATTCCTTCAAGAAAAGATGCTACTGAAGTGGAGGAGCATCCTACCCTTTGTCAACCAGTAGCACGAGTTAGTGCATTTAGTGTCTATAATCCTCCAAACAGGCCAACAACTGGCTCCTCATATTCAAAGATGCTCCCGATGCAGGGCCCATTGGTCCAATTATCCAAAGCAGAAGTAGGAGACTGCAAGTTATTTGATGATGTGGACTGTGAGCCCATGGTTCCTTTGCAATGTGGTTATGGTTGCTGTTCAGCAAGTTCAAGGGGAAGCCATCCTAATGGTTCACTATTAGGTCCGGAGTTCGTTGACTATTTGGAGCCCCCTTCTTTGTTAAGTCATGAATTGATCTCTATAGCTACTGATTTGAACAATATTGCTTGGATCAAGAGTGGACTTGAGAATCATGGTGCCAGAGTAACTGAGAATGCAGCAAACTTGACAGCATCCCATGGTGTTGCCACTGCCTTTCAAAATGGCTTCTTTGAGGAGGGACCAAGCAAGTTTGTGGGTGTGATGCAAGAAATTTTAACAACGCAGATGCCTAGTCATCCATTTGCAATGCCAGCGGAAGTTTAA 1221 0.4783 MTEGDRTDSASPSLEPPHNGVADSELASGADLEPAVGDADSSGLGDGKVAGRVKGPWSPEEDAVLSRLVSKFGARNWSMIARGIPGRSGKSCRLRWCNQLDPCVKRKPFTEQEDRIIVAAHAMHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMDLGRHVPVGADMMEDGSVEAPDKTKASSDETMSVGDINSLNPTQVKSVIMDSGIMHYEDIPSRKDATEVEEHPTLCQPVARVSAFSVYNPPNRPTTGSSYSKMLPMQGPLVQLSKAEVGDCKLFDDVDCEPMVPLQCGYGCCSASSRGSHPNGSLLGPEFVDYLEPPSLLSHELISIATDLNNIAWIKSGLENHGARVTENAANLTASHGVATAFQNGFFEEGPSKFVGVMQEILTTQMPSHPFAMPAEV 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1489 406 Gene3D - 53 105 - -
Dere04g1489 406 Gene3D - 108 154 - -
Dere04g1489 406 FunFam MYB transcription factor 54 105 - -
Dere04g1489 406 SMART sant 105 153 IPR001005 -
Dere04g1489 406 SMART sant 53 102 IPR001005 -
Dere04g1489 406 SUPERFAMILY Homeodomain-like 51 147 IPR009057 -
Dere04g1489 406 MobiDBLite consensus disorder prediction 170 194 - -
Dere04g1489 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 155 IPR017930 -
Dere04g1489 406 CDD SANT 108 151 IPR001005 -
Dere04g1489 406 PANTHER MYB PROTEIN-RELATED 54 199 - -
Dere04g1489 406 Pfam Myb-like DNA-binding domain 106 150 IPR001005 -
Dere04g1489 406 Pfam Myb-like DNA-binding domain 54 100 IPR001005 -
Dere04g1489 406 CDD SANT 56 98 IPR001005 -
Dere04g1489 406 MobiDBLite consensus disorder prediction 1 57 - -
Dere04g1489 406 ProSiteProfiles Myb-like domain profile. 54 100 IPR001005 -
Dere04g1489 406 ProSiteProfiles Myb-like domain profile. 101 151 IPR001005 -
Dere04g1489 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 100 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1489 Dere-ChrDere04 16470034 16475410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1489 49 387 MYB Transcription Factor Family AT3G55730 47.714 1.60e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere04g1489 Myb_DNA-binding 6.1e-14 CL0123