LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g1475	ATGGGAACTCTGTATCCATCTTACTTGATGTCAAATCCAGATTGGTTTGTCCACGAGTGGCAAACCTCAGAATGGAGTAGAGAAGAGAATAAGAAGTTTGAAAGTGCCCTTGCTATATACGACAAGGACACCCCAGATCGATGGTTGAAGGTGGCGGCCATGATTCCTGGGAAGACTGTGTATGATGTGATCAAACAGTACAGGGAGTTAGAAGAAGATGTCTGTGAAATAGAAGCAGGGAGGGTTCCCATTCCTGGATATCTTCGCACTTATGGTGAGGCAAATAGAAAGAGGCCTCCAGCTGCTAGAGTTTATGATCATGAGAGGAAGAAGGGGGTCCCCTGGACTGAAGAAGAACACAGACGTTTTCTGATGGGACTTGTAAAGTTTGGAAAAGGAGACTGGAGAAATATCTCTAGGAATTTAGTAGTGACAAAGACTCCTACTCAAGTGGCAAGCCATGCTCAGAAGTACTTCATAAGGCAAAAACATGGTGGAGGAGGAAAAGACAAAAGGAGACCTAGCATCCATGACATTACCATTGTGAACCATGCAGAATCCACCTCACCAGATAAGAACAAGCCCCTTGCGTTCAACCACTCTCCCATGCTAACTAGCATGCCAAAAGTACAGCTTAACAGGAATCACCATATTGATGATTATGAGTCACCCATGGGCAAGATCTCTATGACTGCTTTCCATGATGCTCATAATGACCCTGTTAAGGAAGCTGTTTATGAGGGCAAGATGGTCAAGTTGACTAGGTTCGATGGGCATCACTTTTGTAATCGAATGAGCTTGCATTCCACTTACACAGCATCTCATGCTTCATTGTGTCTCAGAATACAGGCAGATTCACGTAAGAATGCCAATACTGGTTTTCATATTAATTCATCAGCCAATCCCAAGTTTTCCTTTTCCTCAATATTGTCTGCGTTTGCAAGTGCACTTTTCTTTGGTGGCAACACTGTTGCGTCAGCTTTGTCGCTTCTTTGCTGGTCTCTGAAAGCATAA	1014	0.4379	MGTLYPSYLMSNPDWFVHEWQTSEWSREENKKFESALAIYDKDTPDRWLKVAAMIPGKTVYDVIKQYRELEEDVCEIEAGRVPIPGYLRTYGEANRKRPPAARVYDHERKKGVPWTEEEHRRFLMGLVKFGKGDWRNISRNLVVTKTPTQVASHAQKYFIRQKHGGGGKDKRRPSIHDITIVNHAESTSPDKNKPLAFNHSPMLTSMPKVQLNRNHHIDDYESPMGKISMTAFHDAHNDPVKEAVYEGKMVKLTRFDGHHFCNRMSLHSTYTASHASLCLRIQADSRKNANTGFHINSSANPKFSFSSILSAFASALFFGGNTVASALSLLCWSLKA	337

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g1475	337	Gene3D	-	113	164	-	-
	Dere04g1475	337	ProSiteProfiles	Myb-like domain profile.	107	159	IPR001005	-
	Dere04g1475	337	Pfam	Myb-like DNA-binding domain	114	159	IPR001005	-
	Dere04g1475	337	Pfam	Myb-like DNA-binding domain	23	69	IPR001005	-
	Dere04g1475	337	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	110	162	IPR006447	GO:0003677
	Dere04g1475	337	SUPERFAMILY	Homeodomain-like	109	163	IPR009057	-
	Dere04g1475	337	SUPERFAMILY	Homeodomain-like	23	77	IPR009057	-
	Dere04g1475	337	CDD	SANT	114	159	IPR001005	-
	Dere04g1475	337	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	22	221	IPR043363	-
	Dere04g1475	337	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	107	163	IPR017930	-
	Dere04g1475	337	Gene3D	-	19	84	-	-
	Dere04g1475	337	ProSiteProfiles	SANT domain profile.	115	163	IPR017884	-
	Dere04g1475	337	CDD	SANT	24	70	IPR001005	-
	Dere04g1475	337	SMART	sant	111	161	IPR001005	-
	Dere04g1475	337	SMART	sant	21	73	IPR001005	-
	Dere04g1475	337	FunFam	Transcription factor SRM1	17	84	-	-
	Dere04g1475	337	FunFam	transcription factor MYB1R1	113	164	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g1475	Dere-ChrDere04	16380936	16383413	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere04g1475		Myb_DNA-binding	1.2e-05	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere04g1475	04	16380936	16383413	Dere04g1475	04	16380936	16383413	ECH
	Dere04g1475	04	16380936	16383413	Dere05g0936	05	15317892	15319145	ECH
	Dere05g0936	05	15317892	15319145	Dere04g1475	04	16380936	16383413	ECH