Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1452 ATGGCCTCTGCCTACCGAGATCGCACGTCGGAGTTCCAATTACTGTCTCAGACTCTGAAGAAGATTGAGGGAGTCTCACCACCTAATCAAGCTGAAGATGTTCCCTCTACATCGAAACAATCTACTCCCATATCGTATTCTAGATCTGAGTTCAACAGGAAGGCCTCTCGAATCGGCTTGGGTATCCATGAAACCTCCCAGAAGATTTCGAGGCTTGTTCAATTGGCGAAGAAGTCATCAATGTTTAATGATCCCATTGTGGAAATTCAAGAGTTAACGGCTTTGATTAAGAATGACATTACGGCATTGAATTCAGCTCTTTCAGATTTACAAACCATTCAAAACATGGAGATAGCTGATGGAAATTATTCAGAGGATAGAATCGTTCATTCAACAGCTGTTTGTGATGACTTAAAGAGCAAACTTATGGGGGCAACTAAGCAGCTTCAAGATGTGTTAACTACTAGGACAGAGAATATCAAGGCTCATGAGAATAGGAAGCAGATATTTTCCAAGAACGCATCAAGAGAGAATTCTTTCCAGCATCGACCAAAGCCAGTGACTGAGCCACCCCCTTGGTCAAATTCATTAAATGCATCTGAAAGTTCGCAACAAACATCAGCATTACTTTCGAATGAGGTTCCAGCTGGCAATCAATTAAGACGAAGGTTAGCTGTTGATAACACTCCATCCCAGCAAATGGAAATGTCCATGGTACAGCAGGTTGTACCACGGCAAGAAAGTTATAGTCATAGTCGGGCAACAGCTCTGCACAGTGTGGAATCTACTATCACAGAACTTAGTGGGATCTTCACTCATTTGGCTACAATGGTTGCTCATCAAGGGGAATTAGCTATCAGGATTGATGACAACATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAGGCATCTCAACCAAATATCATCAAATAGGTGGCTTCTAATCAAGATATTTGCCATTCTGATACTTTTTCTGTTGATCTTCATATTCTTTGTGGCCTAA 1020 0.4157 MASAYRDRTSEFQLLSQTLKKIEGVSPPNQAEDVPSTSKQSTPISYSRSEFNRKASRIGLGIHETSQKISRLVQLAKKSSMFNDPIVEIQELTALIKNDITALNSALSDLQTIQNMEIADGNYSEDRIVHSTAVCDDLKSKLMGATKQLQDVLTTRTENIKAHENRKQIFSKNASRENSFQHRPKPVTEPPPWSNSLNASESSQQTSALLSNEVPAGNQLRRRLAVDNTPSQQMEMSMVQQVVPRQESYSHSRATALHSVESTITELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNQISSNRWLLIKIFAILILFLLIFIFFVA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1452 339 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dere04g1452 339 Gene3D - 46 302 - -
Dere04g1452 339 MobiDBLite consensus disorder prediction 163 219 - -
Dere04g1452 339 MobiDBLite consensus disorder prediction 23 48 - -
Dere04g1452 339 PANTHER SYNTAXIN 47 334 IPR045242 -
Dere04g1452 339 MobiDBLite consensus disorder prediction 192 214 - -
Dere04g1452 339 Pfam SNARE domain 284 335 IPR000727 -
Dere04g1452 339 SUPERFAMILY t-snare proteins 47 302 IPR010989 GO:0016020|GO:0016192
Dere04g1452 339 CDD SNARE_syntaxin5 250 322 - -
Dere04g1452 339 SMART tSNARE_6 242 309 IPR000727 -
Dere04g1452 339 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1452 Dere-ChrDere04 16087770 16091566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1452 1 339 SNARE and Associated Proteins AT5G05760 67.059 2.32e-154 434