Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1445 ATGAAGCCTCTCAATGCCTACTTTTGTGCACTTTGTTCTATACACTTTCAAATGATTCTTCCATTCTCTTTGACCTTACTGCTGCTGCTACCTTTCCCTAATGCTTGTGTTCCTATCAATGAGACCGACAGCTTGCGTGGTCAAATTCCGGATGAAGTGGGTCATTTTTTTCGTCTGCAAAATCTTGAACTTGCCAATAACACATTGGAAGGGGATATACCAATCAGCTTGGCCAACTGCTCTGCACTCAAAGTGATAGACTTGGCAACTACATACAATGACTCGGAGGGCATTATTCCAGAAAGCATAGGACTTCTGAAAAATTTATTAAAGTACTTGGTGGGTGCGAATAGATTCTCTGGTCATTTCCCTTCTTCTCTTTACAACATATCTTCCCTTAATATCTTCTCAGTCACAGCTAACCTCCTAAATGGCACTCTACTAGAGAACATAGGCTTCACCCTTCCTAATCTCCAGGAGGTGTTTTGCCCCAAACAATTGGCAACCTCTACCCAAATGAGGCAGCTGTATCTTGATTTCAATAAAATAAGTGGTAGCATCCCAACAGAATTGGTAAAGCTGGTCAATTTGGCTATCCTAACTATGCAGGATAACGTCTTCACAGGAACCATTCCCACTTCTTTTGGTAAGTTCAAGAAGATGCAACTGATGTCTCTCAGTAGGGATAGATTATCTGGACAGGTTCCATCCTTCATAGGAAATCTAACCATGCTGAATAGACTGTACTTATACGATAACATGTTTGAAGGGAGCAATCCTTCGAGTATGGGAAGTTGCCGAAATTTGCAATACTTGGACCTGTCACACAATAATCTCAGTGGTGCTATTCCCAGGCAGGTAATTGGAATATATTCCTTAACACAACTGCTCAACTTATCAGGAAACTCATTAAGCGGCAATCTACCTAGGGAAGTAGGTAATCTGAAAAATATTAACTCGCTAGATCTTTCAGAGAATAAATTGTCAGCTGAAATTCCTGAAGCCATCGGGGACTGCACGAGCCTTGAATACCTTGCAGGAAAATTCCTTTCAAGCACTGACTATAATCGTAATGACTTCAAAGCTTTAGTTTTCAAATTCATGGCAAATGGAAGTTTGGATAAATGGATACATCCTGATAGAGGTGAATGCGGTAAAACAGTCATTCACTGTGATTTAAAGCCTAGCAATATTTACCTTGATTGTAATATGGTTGCTCGTGTAAGTGATTTTGGTTTAGCAAGACTTCTTGCCACCAATAAAGCCCGTCAAAATGAAACCAGCACAATTGAATTAAACGGCAATGTACGATACGCTCCTCCAGGCGAGGCATCAATACAAGGAGACGTGTACAGCTTCGGGATCCTAGTGTTGGAGATGTTCACTGGAAAAAGGCCCACCGATGAATTGTCCACTGGTGGTTTCAATATTCATAATTATGTCAAACTCACATTGGCCCAGAACCTTGTTGATGTTGCTGACCCCAATCTTCTCCAGAGAAACATTGAAATCAAAGCGGAAAATGGAAACACCGATGTGAACCACGTCCATACCCAGATGGATGCTAAAATGCACACGTTTGATGGCAGTTTTTCAGGTGGGACTCGCTTGCTCTTTGGAGTCTTCCAGAGAAAGAATTACCATGGAAGTTGCCATCCGAGAACTTCAACACATCAAGAATAA 1683 0.4135 MKPLNAYFCALCSIHFQMILPFSLTLLLLLPFPNACVPINETDSLRGQIPDEVGHFFRLQNLELANNTLEGDIPISLANCSALKVIDLATTYNDSEGIIPESIGLLKNLLKYLVGANRFSGHFPSSLYNISSLNIFSVTANLLNGTLLENIGFTLPNLQEVFCPKQLATSTQMRQLYLDFNKISGSIPTELVKLVNLAILTMQDNVFTGTIPTSFGKFKKMQLMSLSRDRLSGQVPSFIGNLTMLNRLYLYDNMFEGSNPSSMGSCRNLQYLDLSHNNLSGAIPRQVIGIYSLTQLLNLSGNSLSGNLPREVGNLKNINSLDLSENKLSAEIPEAIGDCTSLEYLAGKFLSSTDYNRNDFKALVFKFMANGSLDKWIHPDRGECGKTVIHCDLKPSNIYLDCNMVARVSDFGLARLLATNKARQNETSTIELNGNVRYAPPGEASIQGDVYSFGILVLEMFTGKRPTDELSTGGFNIHNYVKLTLAQNLVDVADPNLLQRNIEIKAENGNTDVNHVHTQMDAKMHTFDGSFSGGTRLLFGVFQRKNYHGSCHPRTSTHQE 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1445 560 FunFam Leucine-rich repeat receptor protein kinase EMS1 260 353 - -
Dere04g1445 560 ProSiteProfiles Protein kinase domain profile. 207 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1445 560 PRINTS Leucine-rich repeat signature 315 328 - -
Dere04g1445 560 PRINTS Leucine-rich repeat signature 269 282 - -
Dere04g1445 560 SMART serkin_6 306 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1445 560 SUPERFAMILY Protein kinase-like (PK-like) 358 472 IPR011009 -
Dere04g1445 560 Gene3D Transferase(Phosphotransferase) domain 1 368 522 - -
Dere04g1445 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672|GO:0006468
Dere04g1445 560 Pfam Leucine rich repeat 223 279 IPR001611 GO:0005515
Dere04g1445 560 SUPERFAMILY L domain-like 166 345 - -
Dere04g1445 560 Pfam Protein kinase domain 386 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1445 560 Gene3D Ribonuclease Inhibitor 40 159 IPR032675 -
Dere04g1445 560 Gene3D Ribonuclease Inhibitor 160 362 IPR032675 -
Dere04g1445 560 PANTHER OS04G0122200 PROTEIN 44 152 - -
Dere04g1445 560 SUPERFAMILY L domain-like 44 228 - -
Dere04g1445 560 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 164 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1445 Dere-ChrDere04 16024805 16027935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1445 42 504 Receptor kinase-like Gene Family AT3G47570 28.288 3.94e-51 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere04g1445 Pkinase 1.4e-13 CL0016