Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1435 ATGCTGTTGAAATATGTTCCAAGATGTGTAAAGTGTTTTGTTTTCCTGGTGATTCCTGATGAGGGAGTAGAAAGCTGTCATTCTGTTGTAAGGCTTGCGTCGGGTGGCCGATTGGATTGGCACATCAGCAAAATGACTTCAGCTAATTACAATCCACACCCACCGCCTCCCTCGGACTCCGACACCGACTCCGACTCCGACCATGGGCAGTCTAGTTCGAAGCTCCTCCGCCACACTGACCTCTCCGACTCCATTTTCAAATCTTATTTCGAGTTCATCGGCCAATCATCGGCAACAGCTGCAGACCTTTCAAAGATCCAGTCTTTTCTCACATCATCCTCCTCCGGCGCTCTATCATGCTTGATATGCCTAGAACGCATCAGACTATCCGACCCCACCTGGTCCTGTACCGGACTTTGCTTCGCCGTCTTCCATCTAGTCTGCATACAGGGCTGGGCACGCCAGGCATCTGAACTCGCTGCCGCACGCGCGGCAACGCGCTTACCTATTTCAGCTGACAAGGCTGCCGAGTCTGCCACATGGAACTGCCCCAAATGCAGGGTTGAATACTCCAAAACTCAGATCCCTAAAACCTACGTGTGTTTCTGTGGAAAATTGGAGAACCCTCCGAGTGATGATCCCTGGGTATTGCCACATTCATGTGGTGAGATTTGTGGTAGGCCATTGAAGCACAATTGCGGGCACCATTGCCTGTTGCTATGTCATCCAGGGCCATGTCCATCATGCCCAAAACTCGTCAAGGCTCGATGCTTTTGTGGGTCACTAGAAGACGTTCGTCGATGTGGGTACAAGGAGTTTTCCTGTAACAATCCTTGTTCGAAGCTCTTGGACTGTGGTGTTCATCGGTGTTCTGAGATCTGTCACGTTGGCCCGTGCCCACCTTGCCGAGCTCGTGGAGTTTGTAAGTGCCAATGCGGCCTGAAAAAGGAGGAGAGGGAGTGTTGTGATCGCATTTTTCAATGTGATACTCCATGTGAGAAGACTCTTAAGTGCGGGAAGCATGTTTGCCAGAAAGGGTGTCATTCCGGTGGGTGTGGTGAGTGCCCTTTTCAGGGAAAGAGAACGTGCCCTTGCGGAAAGAGGATATATGAAGGCATTCCTTGTGATGCTGCAGTACAATTGTGTGGGGCGACATGCGACAGAATGTTGAGTTGCGGATACCACCGGTGCCCCGAGCGATGCCACCGTGGGCCATGCGTTGAAACTTGCAGAACTGTTGTTAGGAAATCCTGCCGCTGTGGGAGCCTAAAGAAAGAGGTTCCTTGCTATCAAGACTTGTCATGTGAAAGGAAGTGCCACAGGATACGTGACTGCGGGCGGCATCCATGTAAACGGCGCTGCTGTGATGGTGAATGCCCTCCATGTTCAGAGATATGTGGCAGGAGGCTTCGATGTAAAAACCATAAATGTCCTTCTCCATGCCATAGAGGTGCCTGTGCCCCATGTCCAATAATGGTGACAATCTCATGTGCATGTGGTGAGACGCATTTTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCACCTAAATGTCCTAAAAAATGTCCTATTACTCCCTTATGCAGGCATGCACCAAACTCCAAGCCTCACAAATGCCATTATGGAGCCTGCCCTACTTGTCGGCTTCCTTGTGAAGAAGAGTACCCATGTGGCCACAAATGCAAATTAAGGTGTCATGGTTCTAAACCTCCTCCTAATCCAGAGTTTACGCTGAAGCCAAAGAAAAAGAAGGCAATACAACAAAGTGAATGTGTTCCTGGCACACCATGTCCTCCTTGCCCAGACCTTGTGTGGAGATCATGTGTTGGGCAACACATTGGAGCAGAGAGAATGATGGTCTGCTCTGATAAATCACAGTTTTACTGTGAAAATTTGTGCGGAAATCCTCTACCATGTGGTAATCATTATTGTACTAAAACCTGTCATGCCTTGGAGAGACAATCTTCCTTGAACCAGTTACAGCAAAGTGAGCCTTGTGAAGAATGTTCTCTTCCCTGCCAAAAGGTAAGAGAGCCTAAGTGTCCACATCACTGCCCTCAGCCTTGTCATCCTGGAGAATGCCCTCCATGCAAAGTGCTTATTAAACGATCTTGTCATTGTGGCTCAATGGTCCATGTTTTTGAGTGCATCTATTTCAACAGCTTGTCCGCCAAGGATCAAGAGACTGTTCGTTCATGTCGTGGGCCTTGCCATAGAAAGTTACCATATTGTACACATCTGTGCCCAGAGACATGTCATCCTGGTCAATGCCCAAATCCTGATAAATGCTCTAAAAAGGTCATTGTTCGTTGCAAATGCCAAACACTGAAAAAAGAATGGCTCTGTCAAGATGTTCAAGCAGCCTATCATCGTGATGGTTGCCATCCTAGAGACATACCGAAAAACCACTTTGGAAGTGGACTTATTCCTTGCAATTTGGATTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTACAGTTACGTAAATCTAGAGTTGTGGAGGAAAAAAAGTCTGAGACTGAAAAGTCAGTACCAAAACGACGGAGAAGGCGGGAACGGGTACAAGAATCCAACCAAACCACAAAACTGCAGAGAATCACATCCGCAACGAAGAATCTTCTTCTATATATCTTTCTTTTTATGGCCCTTCTTGCTGCTATATATTATGGTTTCAAGGGTCTTTTATGGCTCAATGATTGGATGAATGAAATTGATGAGCGAAGACAAAAAAGATATTCTCGAATCTCATAA 2757 0.4726 MLLKYVPRCVKCFVFLVIPDEGVESCHSVVRLASGGRLDWHISKMTSANYNPHPPPPSDSDTDSDSDHGQSSSKLLRHTDLSDSIFKSYFEFIGQSSATAADLSKIQSFLTSSSSGALSCLICLERIRLSDPTWSCTGLCFAVFHLVCIQGWARQASELAAARAATRLPISADKAAESATWNCPKCRVEYSKTQIPKTYVCFCGKLENPPSDDPWVLPHSCGEICGRPLKHNCGHHCLLLCHPGPCPSCPKLVKARCFCGSLEDVRRCGYKEFSCNNPCSKLLDCGVHRCSEICHVGPCPPCRARGVCKCQCGLKKEERECCDRIFQCDTPCEKTLKCGKHVCQKGCHSGGCGECPFQGKRTCPCGKRIYEGIPCDAAVQLCGATCDRMLSCGYHRCPERCHRGPCVETCRTVVRKSCRCGSLKKEVPCYQDLSCERKCHRIRDCGRHPCKRRCCDGECPPCSEICGRRLRCKNHKCPSPCHRGACAPCPIMVTISCACGETHFEVPCGTEMDQKPPKCPKKCPITPLCRHAPNSKPHKCHYGACPTCRLPCEEEYPCGHKCKLRCHGSKPPPNPEFTLKPKKKKAIQQSECVPGTPCPPCPDLVWRSCVGQHIGAERMMVCSDKSQFYCENLCGNPLPCGNHYCTKTCHALERQSSLNQLQQSEPCEECSLPCQKVREPKCPHHCPQPCHPGECPPCKVLIKRSCHCGSMVHVFECIYFNSLSAKDQETVRSCRGPCHRKLPYCTHLCPETCHPGQCPNPDKCSKKVIVRCKCQTLKKEWLCQDVQAAYHRDGCHPRDIPKNHFGSGLIPCNLDCKSKVQVVESELQLRKSRVVEEKKSETEKSVPKRRRRRERVQESNQTTKLQRITSATKNLLLYIFLFMALLAAIYYGFKGLLWLNDWMNEIDERRQKRYSRIS 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1435 918 CDD NF-X1-zinc-finger 382 431 - -
Dere04g1435 918 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 95 554 IPR034078 GO:0003700
Dere04g1435 918 MobiDBLite consensus disorder prediction 838 860 - -
Dere04g1435 918 CDD NF-X1-zinc-finger 462 510 - -
Dere04g1435 918 CDD NF-X1-zinc-finger 275 323 - -
Dere04g1435 918 CDD NF-X1-zinc-finger 435 483 - -
Dere04g1435 918 SUPERFAMILY RING/U-box 118 195 - -
Dere04g1435 918 CDD NF-X1-zinc-finger 670 711 - -
Dere04g1435 918 CDD NF-X1-zinc-finger 328 375 - -
Dere04g1435 918 CDD NF-X1-zinc-finger 221 269 - -
Dere04g1435 918 Pfam NF-X1 type zinc finger 445 463 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 Pfam NF-X1 type zinc finger 746 764 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 Pfam NF-X1 type zinc finger 285 303 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 Pfam NF-X1 type zinc finger 233 250 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 Pfam NF-X1 type zinc finger 392 411 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 Pfam NF-X1 type zinc finger 539 549 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 Pfam NF-X1 type zinc finger 640 650 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 Pfam NF-X1 type zinc finger 684 699 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 Pfam NF-X1 type zinc finger 338 356 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 Pfam NF-X1 type zinc finger 466 490 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 SMART znfxneu3 682 700 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 SMART znfxneu3 529 550 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 SMART znfxneu3 472 491 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 SMART znfxneu3 392 412 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 SMART znfxneu3 338 357 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 SMART znfxneu3 445 464 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 SMART znfxneu3 640 672 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 SMART znfxneu3 233 251 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 SMART znfxneu3 285 304 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 SMART znfxneu3 745 766 IPR000967 GO:0005634|GO:0008270
Dere04g1435 918 MobiDBLite consensus disorder prediction 49 73 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Dere04g1435 zf-NF-X1 0.0043 No_clan