Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1434 ATGACGAAATTGCCTTCCTACTTCGTCACTGTTAGTCTCGCTGTCGCCTCCATAATTATCTTCACTGCGATTCCCTCATCCCATGCTCTCGGCTCCGGTGGCACCCTCGCAGTCGTCGGCGACGGCTCCGCCACCGTATGTGGCATCGTGGCGGGAGAGCTTACGCGGCGCATTGAATGTTACCGTCGCGGGAGGATCATCGCCGTGCTTCCCAACATTTCGTTTTCGTCGATTTCCGGTGGGAGGAGCTACTTCTGCGGTCTCAGCTCCAGTAACTACAGTTTGCTTTGTTGGGGCACAGTGTCTTCCACTGATACCTTCCAAAGTAAACGACTTTACAACAACCCCACTGTTCCATTAGAGAATCTTGCTATTGGAGATGCTCAAATTTGTACCACGTTAGTGGGTAATGGGAAGGTCGAATGCTGGAGAACCAATCGGGAGTTTCAACTACCATCAAGGTCTTATGAATTTGTGTCAATATCATCTGGGTCCGGATTTTCTTGTGGAATTTTGAGGAATAGTTCTCGGGTTCGGTGTTGGGGAAACATGTCCATTGCGAATCAGATACAGAGTGAATTTGGAAACTCTTCTATGTGGAGTCTTGTAGCAGGCGATTCCCACGTTTGTGGACTGAATTCAAATGGGTTTTTGGTATGTAAAGGAAGTAACAGTTCTGGTCAACTAAATGCTCCTCACGGTGGACCTTGGAAATATAGTGGGTTGGCTCTCGGAGCAGAGCACAGCTGTGCGATAAGAAGATCGAATGGCTCGGTTGTTTGCTGGGGTGGTCGAGGACAATTCTCGGTGAATCTCACACAAAGAGTTTCGTTTGAGGTAATCGTTTCTGGGTCGAATTTTACTTGTGGAGTGACAAGAAGCAATTTATCAATAATGTGTTGGGGTCCTGGTTGGTTTAATAGTACTCCTGATTCTAGTACTTCAAGGTTTGAGCTTCCCTTGCCTCCCATTCTTCCAGGGCCTTGTGTTCAATCTTCTTGTACTGAATGAAGCTCAAATAATGGTGGGGCTAATTCAAACGGTAGCCCACATTCAAGCTTATCAACTGCCATTAAACGTCAAGGTTCAGCAATAATGAGACGCCAGAGAAGTGGAACCTCATCAACAAAACACGCAGATAAAGCAGAGGAGTTCACCCTGCCTGAGCTTATAACAGCCGCCAACAATTTCTCACCTGAGAATAAGATCGGCTCCGGAAGCTTCGGCGTCGTGTACAGAGGCAAACTCGCCGACGGTCGCGACGTGGCAATCAAAAGGGGCGAAACCAACAAGAAGTTTCAAGAGAAAGAAACCGCATTTGAGTCAGAATTATCGTTCTTGTCACGCCTTCACCACAAGCATCTAGTTAGGCTAGTTGGGTTCTGTGAAGACAAGCACGAGAGGCTCCTGGTGTACGAGTACATGAAGAACGGAGCACTACACGACCATTTACATGACAAGAACAATATAGTAAGAAGTAGCAGTGTCGTAAATTCGTGGAGCATGAGGATCAAAATCGCGCTCGATGCTTCTCGAGGAATCGAGTATCTCCATAATTACGCAGTTCCTCCGATAATTCACAGAGACATCAAGTCTTCCAACATTCTTCTAGACGCTAATTGGACAGCAAGAGTGTCCGATTTTGGGTTGTCGTTAATGGGTCCAGAATTCGACCACTATCACCGTCCGAAAAAAGCAGCCGGAACCGTCGGATACATCGATCCTGAGTATTACAGTCTGAATGTATTGACTGCAAAAAGCGACGTGTATGGGTTTGGGGTGGTTCTGCTAGAACTTTTGACGGGAAAGAGAGCTATATTCAAGAATGGCGAAAATGGGAATACAGGTACACCTGTGAGTGTGGTGGAGTTTGCGGTGCCGGCGATTATGGCCGAAGAATTGGAGAGAGTGCTGGACGTGAGGGTTGGACCGCCGGAGAAGAATGAAGCAGAGGCGGTGGAGCTGGTGGCTTATACTGCAATGCGTTGTGTGAGTTTGGAAGGAAAAGACAGACCAACGATGGGTGATATTGTGGCAAATTTGGAGAGGGCTTTGGCTCTTTGTGATGCTAGTCATGGCGGCATTTCCAGTGGTACAATCTCTACTGTTTCAGAATGA 2118 0.474 MTKLPSYFVTVSLAVASIIIFTAIPSSHALGSGGTLAVVGDGSATVCGIVAGELTRRIECYRRGRIIAVLPNISFSSISGGRSYFCGLSSSNYSLLCWGTVSSTDTFQSKRLYNNPTVPLENLAIGDAQICTTLVGNGKVECWRTNREFQLPSRSYEFVSISSGSGFSCGILRNSSRVRCWGNMSIANQIQSEFGNSSMWSLVAGDSHVCGLNSNGFLVCKGSNSSGQLNAPHGGPWKYSGLALGAEHSCAIRRSNGSVVCWGGRGQFSVNLTQRVSFEVIVSGSNFTCGVTRSNLSIMCWGPGWFNSTPDSSTSRFELPLPPILPGPCVQSSCTEXSSNNGGANSNGSPHSSLSTAIKRQGSAIMRRQRSGTSSTKHADKAEEFTLPELITAANNFSPENKIGSGSFGVVYRGKLADGRDVAIKRGETNKKFQEKETAFESELSFLSRLHHKHLVRLVGFCEDKHERLLVYEYMKNGALHDHLHDKNNIVRSSSVVNSWSMRIKIALDASRGIEYLHNYAVPPIIHRDIKSSNILLDANWTARVSDFGLSLMGPEFDHYHRPKKAAGTVGYIDPEYYSLNVLTAKSDVYGFGVVLLELLTGKRAIFKNGENGNTGTPVSVVEFAVPAIMAEELERVLDVRVGPPEKNEAEAVELVAYTAMRCVSLEGKDRPTMGDIVANLERALALCDASHGGISSGTISTVSE 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1434 705 Gene3D - 191 322 IPR009091 -
Dere04g1434 705 CDD STKc_IRAK 403 683 - -
Dere04g1434 705 SUPERFAMILY RCC1/BLIP-II 27 264 IPR009091 -
Dere04g1434 705 Gene3D - 21 190 IPR009091 -
Dere04g1434 705 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 183 691 IPR044815 GO:0004674
Dere04g1434 705 FunFam serine/threonine-protein kinase-like protein CCR1 366 474 - -
Dere04g1434 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 525 537 IPR008271 GO:0004672|GO:0006468
Dere04g1434 705 Gene3D Transferase(Phosphotransferase) domain 1 475 692 - -
Dere04g1434 705 SUPERFAMILY Protein kinase-like (PK-like) 376 681 IPR011009 -
Dere04g1434 705 ProSiteProfiles Protein kinase domain profile. 397 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1434 705 SUPERFAMILY RCC1/BLIP-II 239 314 IPR009091 -
Dere04g1434 705 Gene3D Phosphorylase Kinase; domain 1 358 474 - -
Dere04g1434 705 ProSitePatterns Protein kinases ATP-binding region signature. 403 425 IPR017441 GO:0005524
Dere04g1434 705 SMART serkin_6 397 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1434 705 MobiDBLite consensus disorder prediction 332 372 - -
Dere04g1434 705 MobiDBLite consensus disorder prediction 332 377 - -
Dere04g1434 705 FunFam Serine/threonine-protein kinase-like protein CCR4 475 697 - -
Dere04g1434 705 Pfam Protein tyrosine and serine/threonine kinase 400 681 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1434 Dere-ChrDere04 15949373 15951790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1434 361 705 Receptor kinase-like Gene Family AT3G55950 74.510 1.50e-171 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Dere04g1434 PK_Tyr_Ser-Thr 1.7e-45 CL0016