LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g1432	ATGGCTGTCTCCGACGTCGGAGCTGTGCTAGAATTCTTGAGGAACAATGGCTTTACAGAGGCAGAGTCTGCCCTCAAAGAGGACATAATCGAAAAGGGTGATACGGGTTCATTTGACTACGAGAAATTCTTCTTCCCGATGGTGCCGCCGCCGCCGGCGGTTAGAGTCCGATCACTTTCGCGGTGTTCGGAGGCGCTGGGTGGCAGAGAGTGCTCGAAATCAAGCTCTAAGTCGTCAGACGATGAGTTTGTGAGCTTGGGGTCATCTACTTCCGATGTTTGTTCTTCGGAATTTATCAATCCATATGGAATCCGCTCCTCATCTCAGACTCACAATGATTCTGAATCTTCATCTGATAGATTATCTCAATTTGGCACAGCACGCGATTACCATGATTTTGACATGCAAAATGAACCATATTGGTATAATGAGAAAGATGATGATGATTTCATGACCCCTAGTTTTGAGGGGCCAGATTTCTTTGGCTGCCAAAGTGAGGATAAGTTCATCATGACATTACAAACGGAGAATCAACCTAATCTTCTGGGAAATAATTACAATTGTGAAGAATTTCAATTGGAGGGAAACGGTGATTGCATGGACAAGCCATGCCTTTTTAATTATTTGGCTAGAGAAAATGAAAATGTGACTTGTTCAGAAGACTATTGTGATATAGATAAGAAAGATCAGCTGGAAGGAGGATTAGATAGAGAGGTTGAGAATCATAATCTTACCTATAATTGTGAAGTTCCATCTTGCAAGCACTCTGCAGGTTCAGGAGAGTCTTGTACTGGGGATCCTGCAAACGACAGCTGCCCTAGTTTAAAGGAAATTCAGCTGAATGGTTTTCAATTAAAGGTTGTCAGCGATACTTCCTCTACTGATTCCGCTCCAGAGCATACTATGACCCAGACTTTTGACCACTATCTTAACAATAATGGCAATAAGGGGCACAGTGCTCCCTATGACTTAACTATTGAATTTGCTGAAACTGATCTACCTAATGGACTCAACAGCTATAATGCTCAAGATTGTGGAGAATTCACTGAAGAATGCCAAGAACCAGAAAATGCTGCAGACGGTGAGGACATGATTGACGATGAGCTCTTAAAGTACACTCAGGAGGATGAATATGAAGTTTTTGACCTGAGAATCATACATAGAAAGAACAGGACTGGATTTGAAGAAAGCAAGGATTTGCCCATTGTGCTAAATACAGTCATAGGAGGCAGGTACTATGTAACAGAATATCTTGGTTCAGCTGCCTTCAGTAAGGTTGTTCAGGCACATGATCTTCAGACAGGAATTGATGTCTGCTTGAAGATTATAAAAAATGACAAAGACTTTTTTGACCAAAGCTTAGATGAAATCAAACTTCTAAAGCTTGTCAATAAGCATGACCCAGCTGATGAACACCACATATTGCGTCTTTATGACTACTTCTATCATCAGGAGCATCTATTCATTGTTACTGAGCTTCTGCGAGCAAACCTGTACGAATTTCAGAAATACAATCAAGAATCTGGTGGTGAAGCATATTTTACATTGAACAGGTTGCAGCTCATTACTCGTCAGTGTTTGGAGGCACTGCAATACTTGCATAGCTTGGGAATAATTCACTGTGACCTGAAGCCAGAAAATATTCTCATTAAAAGTTACAAAAGATGTGAGATTAAAGTTATTGATCTAGGAAGCAGTTGCTTTCAATCAGACAATTTATGCCTATATGTACAGTCGCGATCCTACAGGGCCCCTGAAGTGATGTTAGGCCTCCAATATGATGAAAAAATTGACATATGGTCTCTTGGCTGTATCTTGGCCGAGCTATGCTCTGGTGAAGTGCTCTTTCCAAATGATGCTGTTGCAATAATTCTCGCACGCATGATTGGAATGCTTGGTCCTCTTGATCTGGAGATGTTAGTGAGAGGGCAGGAAACACACAAGTATTTCACCAAAGAATATGATATTTATTATGTAAATGAGGAGACAAACCAATTGGAGTACATAATTTCAGAGGAGTGGTCGTTGGAGCAGCACATGCAGGTTTCTGATACGATGTTTATCGATTTTGTCAGATACTTGCTTAGCACTAATCCCAGAAGACGACCAACTGCAAGACAGGCACTAAAGCATCCATGGCTTTCCCATGTTTATAACTCCAAGTAG	2166	0.4127	MAVSDVGAVLEFLRNNGFTEAESALKEDIIEKGDTGSFDYEKFFFPMVPPPPAVRVRSLSRCSEALGGRECSKSSSKSSDDEFVSLGSSTSDVCSSEFINPYGIRSSSQTHNDSESSSDRLSQFGTARDYHDFDMQNEPYWYNEKDDDDFMTPSFEGPDFFGCQSEDKFIMTLQTENQPNLLGNNYNCEEFQLEGNGDCMDKPCLFNYLARENENVTCSEDYCDIDKKDQLEGGLDREVENHNLTYNCEVPSCKHSAGSGESCTGDPANDSCPSLKEIQLNGFQLKVVSDTSSTDSAPEHTMTQTFDHYLNNNGNKGHSAPYDLTIEFAETDLPNGLNSYNAQDCGEFTEECQEPENAADGEDMIDDELLKYTQEDEYEVFDLRIIHRKNRTGFEESKDLPIVLNTVIGGRYYVTEYLGSAAFSKVVQAHDLQTGIDVCLKIIKNDKDFFDQSLDEIKLLKLVNKHDPADEHHILRLYDYFYHQEHLFIVTELLRANLYEFQKYNQESGGEAYFTLNRLQLITRQCLEALQYLHSLGIIHCDLKPENILIKSYKRCEIKVIDLGSSCFQSDNLCLYVQSRSYRAPEVMLGLQYDEKIDIWSLGCILAELCSGEVLFPNDAVAIILARMIGMLGPLDLEMLVRGQETHKYFTKEYDIYYVNEETNQLEYIISEEWSLEQHMQVSDTMFIDFVRYLLSTNPRRRPTARQALKHPWLSHVYNSK	721

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g1432	721	Gene3D	Phosphorylase Kinase; domain 1	407	493	-	-
	Dere04g1432	721	SUPERFAMILY	Protein kinase-like (PK-like)	401	718	IPR011009	-
	Dere04g1432	721	CDD	PKc_DYRK_like	412	714	-	-
	Dere04g1432	721	Gene3D	Transferase(Phosphotransferase) domain 1	466	714	-	-
	Dere04g1432	721	SMART	serkin_6	412	714	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g1432	721	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	538	550	IPR008271	GO:0004672\|GO:0006468
	Dere04g1432	721	MobiDBLite	consensus disorder prediction	69	91	-	-
	Dere04g1432	721	MobiDBLite	consensus disorder prediction	68	91	-	-
	Dere04g1432	721	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	109	715	-	-
	Dere04g1432	721	FunFam	Putative serine/threonine-protein kinase dyrk2	406	493	-	-
	Dere04g1432	721	ProSiteProfiles	Protein kinase domain profile.	412	714	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere04g1432	721	FunFam	Serine/threonine-protein kinase ppk15	491	715	-	-
	Dere04g1432	721	Pfam	Protein kinase domain	414	714	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g1432	Dere-ChrDere04	15926594	15930870	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g1432	409	709	MAP Kinase Gene Family	AT5G19010	30.841	4.55e-33	132

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-PRP4	Dere04g1432		Pkinase	1.7e-52	CL0016