Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1428 ATGCAGGTCAAAATTATGGTTTTGTTTCTTGTCTTCATTCGAGTGTCCTTATCCTTGGACGAGCCATACACAAGACTCATTTCAACACTACTTAACACTATTCAGTTTTCAAAGAACCTAGGCATGTGCAGTGGTTCAAAAAGTAAACTTTCTCCCTCAAACAACGCCATGGATAGTAAGCAGAACCGTGATGCTTTCTGCAACTCTTCGGTTTTGCTTGAACATTCTGCATCTGATGATCTTGAAGCTTTCAGAAAAGAAGTGGAAGAGAACGGTTGTGAAATTAACGAGTCAAGCCTTTGGTATGGTAGAAGAATCGGATCAAAGAAGATGGGGTTGGAGAAGAGGACAGCCCTCATGATTGCTTCTTTATTTGGAAGCACTAGAGTGCTGGAGTATATCATTGAGACAGGAAGGGCTGATGTGAAAAGGTCCTGTGGTTCTGATAGGGCCACTGCTCTCCATTGTGCTGTTGTTGGTGGCTCTCAATCTTCGCTCAAGATTGTTAAGCTCTTGCTTGATGCTGGTGCTGATGCTGATTGCGTTGATGCTAGTGGAAATAAGCCTGTTAACCTGATTGCCCCTCCCTTTAATTCCTTGTTCAACACAAGAAGGAAGGCCATGGAGTTGTTGCTCAGAGGTGGGGAAGGAGATCAAATCATCCATCAGGAGATGGAGCAACAGAAAATTGCAGTGCCTTCTCTCTCTTCAAAAGAAGGAACTGAGAAGAAAGAATATCCAGTTGATGTATCGTTGCCTGACATAAACAATGGTATATATGGAACGGACGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCATGCTCAAGGGCTTACTCCCATGATTGGACCGAGTGTCCATTTGTTCATCCTGGGGAGAATGCGAGGAGGAGGGACCCACGGAAGTACCCTTACAGCTGTGTTCCCTGCCCCGAGTTTCGCAAGGGGACCTGCCAGAAGGGAGATGCTTGTGAGTATGCACATGGTGTTTTCGAGTCCTGGCTCCATCCTGCTCAATACCGAACAAAGCTTTGCAAGGATGAGACTGGATGCACTAGGAAAGTTTGTTTCTTTGCTCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCTACTGGGTCAGCTATGCCTTCACCCAAGTCCTTTTTGGCTAATGTCCTTGATATGACATCAATGAGTCCATTAGCTCTTAGTTCCTCGTCTTTGCCTATGCCAACTGTTTCAACACCGCCTATGTCTCCCTTGGTAGCTTCTTCATCTCCCAAGAGCGGAAGCTTGTGGCAGAACAAAGTAAACCTCACCCCACCGTCCTTGCAGCTCCCAGGGAGCCGGCTGAAGGCTGCCTTGAGTGCTAGGGATCTGGATCTGGAGATGGAACTGCTTGGACTAGAAAGTCCTGCTAACCATCAGCAGCAGCAACGGCAGCAATTGATTGAAGAGTTGGCTCGACTCTCCTCCCCATCTCTACGAAACAAAGACTTAAGTAGGATTGGTGATTTGAACCCAACCAACCTCGATGACCTTCTGGGATCTGTTGATCATCCTGTATTATCTCAATTACATGGTCTTTCAGCACAATCATCATCACCTAGCCAATTGCTCTCTCCAAGTGGGCTTCAGATGCGCCAAAACATGAACCACCTTCGTGCAAGCTATCCAACCAATCTCCCTTCCTCTCCGGTGAGGAAATCCGCAGCATTCGGATTTGACTCATCAGCTGCTGTGGCAGCAGCAGTGATGAATTCCAGGTCTGCTGCCTTTGCAAAGCGAAGCCAAAGTTTTATTGATCGCGGTGCGTCGGCAACTCACCATCTTGGACTATCTTCACCTTCCAACCTCAACTGTAGGGTGTCATCTGCCCTTTCAGATTGGAGTTCCCCTGATGGAAAATTGGATTGGGGCATGAATGGAGATGAGCTGCACAAGCTCAAGAAATCTGCTTCATTCGGATTTCGGAATAATGCAGTGTCTGCCACCTCCATGACTCCATTGGAACATGGCGAGCCAGATGTCTCATGGGTTCATTCGTTGGTTCGAGATGTGCCCCCTGAGAGTTATGATGCTGAGAAGAAGCAATGTGATCCGAGTAAAGAGATGATTCCCCCATGGGTGGAGCAAATGTATATAGAACAAGAGCAGATGGTGGCATAA 2151 0.4695 MQVKIMVLFLVFIRVSLSLDEPYTRLISTLLNTIQFSKNLGMCSGSKSKLSPSNNAMDSKQNRDAFCNSSVLLEHSASDDLEAFRKEVEENGCEINESSLWYGRRIGSKKMGLEKRTALMIASLFGSTRVLEYIIETGRADVKRSCGSDRATALHCAVVGGSQSSLKIVKLLLDAGADADCVDASGNKPVNLIAPPFNSLFNTRRKAMELLLRGGEGDQIIHQEMEQQKIAVPSLSSKEGTEKKEYPVDVSLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDACEYAHGVFESWLHPAQYRTKLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSFLANVLDMTSMSPLALSSSSLPMPTVSTPPMSPLVASSSPKSGSLWQNKVNLTPPSLQLPGSRLKAALSARDLDLEMELLGLESPANHQQQQRQQLIEELARLSSPSLRNKDLSRIGDLNPTNLDDLLGSVDHPVLSQLHGLSAQSSSPSQLLSPSGLQMRQNMNHLRASYPTNLPSSPVRKSAAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGASATHHLGLSSPSNLNCRVSSALSDWSSPDGKLDWGMNGDELHKLKKSASFGFRNNAVSATSMTPLEHGEPDVSWVHSLVRDVPPESYDAEKKQCDPSKEMIPPWVEQMYIEQEQMVA 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1428 716 ProSiteProfiles Ankyrin repeat profile. 149 184 IPR002110 GO:0005515
Dere04g1428 716 SMART ANK_2a 114 144 IPR002110 GO:0005515
Dere04g1428 716 SMART ANK_2a 149 181 IPR002110 GO:0005515
Dere04g1428 716 FunFam Zinc finger CCCH domain-containing protein 66 262 330 - -
Dere04g1428 716 PANTHER UNKEMPT FAMILY MEMBER 74 681 IPR045234 -
Dere04g1428 716 Pfam Ankyrin repeats (3 copies) 96 181 IPR002110 GO:0005515
Dere04g1428 716 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 309 329 IPR000571 GO:0046872
Dere04g1428 716 Gene3D - 37 196 IPR036770 -
Dere04g1428 716 ProSiteProfiles Zinc finger C3H1-type profile. 304 331 IPR000571 GO:0046872
Dere04g1428 716 ProSiteProfiles Ankyrin repeat region circular profile. 149 183 - -
Dere04g1428 716 SMART c3hfinal6 304 330 IPR000571 GO:0046872
Dere04g1428 716 SMART c3hfinal6 339 362 IPR000571 GO:0046872
Dere04g1428 716 SUPERFAMILY Ankyrin repeat 68 191 IPR036770 -
Dere04g1428 716 Gene3D - 305 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1428 Dere-ChrDere04 15889587 15893482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1428 70 680 C2H2 Transcription Factor Family AT5G12850 41.088 2.38e-140 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere04g1428 Ank_2 1.8e-07 CL0465