Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1421 ATGTCAGGCCAAGAAGCTCAGAGGTTCACATGGCACTACACAGAGCTGGATGACCGAAATCTCGTAATCCGAGGACGAACATTTTTCTTCGTCGTCGTGCTCTTCTCCATTATACTTCTCGTCGCCCTTCTCTTCCTCTACGCTCGCTGGATCTGGCGGTACCGGGGCCACCTTCCAACCACCTACAATTCCAACCAAGCGCGCCACGCGCCGCCTCCGCCTCAGCCTCAGGGCCTCGACCGCGCTTCAATCAAGAAATTGCCTATAATTTTGCACCAGACGCCTTCGTATCCTAATTGTAAATTGGAGGAAACTGAGTGCTGTATTTGCCTTAGCGTGTTCAAAGATGGAGAGAAATTGAAGGTTTTGCCCGGTTGCGACCATAGTTTCCATTGTGACTGTGTTGACAAGTGGCTTTCTAATCACTCTAGTTGTCCTCTCTGCAGATCTTCTTTGAAGGTTCATTCTTCCTTTCCCAAGATCTTGATTCAAGAACCACCCGTTCGAATCAATCTTCCCTTGTAA 525 0.4895 MSGQEAQRFTWHYTELDDRNLVIRGRTFFFVVVLFSIILLVALLFLYARWIWRYRGHLPTTYNSNQARHAPPPPQPQGLDRASIKKLPIILHQTPSYPNCKLEETECCICLSVFKDGEKLKVLPGCDHSFHCDCVDKWLSNHSSCPLCRSSLKVHSSFPKILIQEPPVRINLPL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1421 174 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Dere04g1421 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 155 - -
Dere04g1421 174 SMART ring_2 107 148 IPR001841 -
Dere04g1421 174 CDD RING-H2_EL5-like 106 149 - -
Dere04g1421 174 FunFam RING-H2 finger protein ATL66 71 154 - -
Dere04g1421 174 Pfam Ring finger domain 106 149 IPR001841 -
Dere04g1421 174 SUPERFAMILY RING/U-box 100 156 - -
Dere04g1421 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1421 Dere-ChrDere04 15796216 15796740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1421 2 157 C3H Transcription Factor Family AT3G11110 42.857 1.51e-34 117