Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1419 ATGGACGACGCTTCATCACCCCCACCTCCTCACGAGCTTCACCCTCCCCAAGAAACCACACCCACCGATGCCACCATCACCACCGTTGCAACCGCCACTCCCTGCCAAACATCTCATGATAACACCAACATCAGAACTGACAACAGTGCTCGCAAATGTAAAGGCAAAGGTGGTCCTGACAACAATAAATTTAGGTATCGTGGTGTGAGGCAACGAAGCTGGGGCAAATGGGTCGCCGAGATCCGAGAGCCCCGCAAGCGAACCCGAAAGTGGCTCGGCACCTTCGCCACCGCCGAGGACGCGGCTCGAGCCTACGACCGCGCCGCCATCATCCTCTACGGCTCTAGGGCTCAGCTCAATTTACAACCCTCTGCCACCTCACCTTCGCTTTCTTCGTCCTCTCGTGCCTCTAACTCTTCTTCCTCTTCTCAAACCCTCCGTCCCTTGCTTCCTCGACCCGCTGGCTTCGGCTTCGGCTTCACCTTTCCCTCCGGCGCCTCATCGGGCTTCTTACCCTACGGGGTTTACCCCAATAATACTAATAATATACAGCAGGTGATGTGTCCTATGAATAACATAGTACAGCAGCATCATCAAGTGGTGCAACTACCACAGAAACCGCATCAGTCCCCGGAATCTGATGGAAATTTTGTTGATAACTCCAACGCAGCAACCTCGTACCAGAATCAGCTGCAGCAGCAACAGGATATGTCGAATCAACAGCAGCATCAGAATTGCATGTACGATGATATGAGTTCCATGGTGGGTTCGGTTGGGGCAAGCTTTTGCACTTCGCAGACTCAGACTGTAGCTGCACCGGCGGATCCGTGGCTGTTGGCGAATGAGGAAGAGTACCCACCAAATCTATGGGACTACTATAACGATCCGTTCTTGTTTGATTTTTAG 906 0.5287 MDDASSPPPPHELHPPQETTPTDATITTVATATPCQTSHDNTNIRTDNSARKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSATSPSLSSSSRASNSSSSSQTLRPLLPRPAGFGFGFTFPSGASSGFLPYGVYPNNTNNIQQVMCPMNNIVQQHHQVVQLPQKPHQSPESDGNFVDNSNAATSYQNQLQQQQDMSNQQQHQNCMYDDMSSMVGSVGASFCTSQTQTVAAPADPWLLANEEEYPPNLWDYYNDPFLFDF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1419 301 CDD AP2 65 122 IPR001471 GO:0003700|GO:0006355
Dere04g1419 301 MobiDBLite consensus disorder prediction 202 221 - -
Dere04g1419 301 MobiDBLite consensus disorder prediction 122 148 - -
Dere04g1419 301 MobiDBLite consensus disorder prediction 1 22 - -
Dere04g1419 301 MobiDBLite consensus disorder prediction 35 65 - -
Dere04g1419 301 FunFam Ethylene-responsive transcription factor 2 65 123 - -
Dere04g1419 301 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 45 261 - -
Dere04g1419 301 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Dere04g1419 301 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Dere04g1419 301 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Dere04g1419 301 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
Dere04g1419 301 MobiDBLite consensus disorder prediction 45 65 - -
Dere04g1419 301 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Dere04g1419 301 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Dere04g1419 301 Pfam AP2 domain 65 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1419 Dere-ChrDere04 15762455 15763360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1419 51 301 AP2-EREBP Transcription Factor Family AT2G40220 44.746 1.83e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere04g1419 AP2 1e-12 CL0081