Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1416 ATGAACGCCATGAAGGGGTATGAGCCCCGTTCGAGCTCTTCCTGTGCAGCCTGCAAGCTGTTGAAGAGGAGATGCACACCCAATTGTATATTCGCACCGTACTTTCGGTCCGACGAGTGTAAGAAATTCGCGAAAGTCCACAAGGTGTTCGGAGCCAGCAACGTAAGCAAGATCCTCGTAGAAGTGCCAGAAGAACAGAGGGAGGACACGGTGAACTCGCTGGCTTACGAGGCAGAGGCAAGGCTCAAGGACCCTGTGTATGGATGCATTGGAGCCATAGCTCTACTGCAGAGGAAGATGGTGGAGCTTCAACATGACTTGGCCATTGCCAAGGCTCGTCTTGCTCGTTATGCTACTACTGCTGCTGCTTCTTCTTCTACAATCCCTTCCAATGATTTTTTGAATGCTAATGTTAGCTTGCCTCCCTTCCCTGACTTTGACTTTTCTACTTGCAGTGATTTCAGTGATGGTTTCTGCCATAGCTCTTCGTCTCAACTATTGAGTCGAAATGAGCCGGTGGATGATTTTATTCAAATCCCATATATATTTTGA 552 0.4801 MNAMKGYEPRSSSSCAACKLLKRRCTPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLKDPVYGCIGAIALLQRKMVELQHDLAIAKARLARYATTAAASSSTIPSNDFLNANVSLPPFPDFDFSTCSDFSDGFCHSSSSQLLSRNEPVDDFIQIPYIF 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1416 183 Coils Coil 93 113 - -
Dere04g1416 183 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Dere04g1416 183 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 126 - -
Dere04g1416 183 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1416 Dere-ChrDere04 15742027 15742578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1416 4 160 AS2 family AT3G11090 63.694 4.73e-68 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere04g1416 LOB 5.2e-38 No_clan