Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1415 ATGGATGAATCATCTCTGTCAGCGATGATGATCTTCTCAAGCTTTTTACCTACTGGGTCTTTGCTAGATTCGTTGATTCACATATCTAATGAAGTTGCCTCCATGGAAAATTTCCCTTTTGTTCAATTCAGAAATGTTTCGTCCATGATCAGGAGGGTGAAGCTTCTTTCTTCTCTGTTCGAGGAGATTCAGGAAACAGATTCCCCACTTCCTCCTTCTTCAATCCTGTGTTTCACAGAGCTCTTCTTTGTGATCAGAAGAGTGAAGCTTTTGATCCAAGACTGCAAGGAAAGCAGCTCGCTCTGGGGACTCATACAGTTAGAGTTCATTTCCAATCAATTCTATGTGCTTGTCAAGGAGATGGGAAGGGCTTTAGATATCCTTCCTCTGAGCTTGCTTAATATAACAGTAGATATAAGAGAGCAAGTGGAACTTCTGCACAAGCAAGCAAAAGGGGTTGAGTTGTTCATTGATCCTCGTGAGTTTCAACGCAGAGAGCAGCTTCTGCAAGTAATGGCCAACAACAATCTTCAGAACAAGAAAAACAAGGGATTTCTCGAGTTTGGGAAAGTGCAAGAAATATTAAGCAGCATTGGTTTGAGAACCCCGTCAGATTACGATAGAGAAATGTCAAAGCTTGAGGCTGAAGCTCAGAACCAGGCAGGCACAGGAGGATTAATCGTTATGTCCAACATAAACAATCTCATATCTATGGTTACCTATTCCAAATACATGATATTTAGAGATGGAGAGAAAGAAATAGATCAAGAAGACTGTAAGCCAGCAATGTCTGCATTTACATATAAAAGTTCTGATTGTTCTTCTTCATCTTTTTCTCAGTCAACAGCATCAGTACCTAATGTTCCGGACGAATTTCGATGCCCAATTTCACTTGATTTAATGAGAGACCCAGTGATTGTATCATCCGGGCATTCTTACGATCGAATTTCGATTGCACAATGGATAAACTCTGGACACCACACTTGCCCCAAAAGTGGGCAAAGGTTGATCCACACAGCTCTTATACCCAACTATGCATTGAAGAGTCTTGTCCAGCAATGGTGCCACGAGAACAACGTCCCAGTGAATGAGCCGACCTCATCATCTTCCTCGACGTTGGAGGAATCCAACAGCAAGGGCAACTTGAAGGATAATGCCATCGATCATATCTCTGCTAAAAAAGCAGCCATAAATGCTGTAAAAATGACAGCAGAATTTCTAGTGGGAAAATTGGCAACTGGGTCGGCTGAAATACAAAGGCAGGCTGCTTATGAGCTTCGGTTACTAGCAAAAACTGGGATGGATAATCGAAGAATCGTTGCTGAGGCAGGGGCGATTCCGTTTCTAGTGACATTATTAGTGTCCCATGATCCCCGAATCCAGGAACACTCCGTCACGGCCTTGCTTAATCTCTCCATCTTCGACAATAACAAGGTTTTGATCATGGCTGCTGGAGCAGTGGATAACATAATAGAAGTGCTTGAATCAGGAAAAACCATGGAGGCAAGAGAAAATGCAGCAGCAGCAATCTTTAGCTTGACTATGGTTGATGATTGCAAGGTAGAAATTGGAGCTCGTCCAAAGACCATACCTGCATTAGTAGGACTCTTGAGAGAGGGCAGTCCTATTGGGAAAAGAGATGCTGCTACTGCCATTTTCAATCTTGCAGTTTACAACCCCAACAAGGCGAGAATCGTTAATGCTGGAGCTGTTCCTTTGCTTATCGACTTGCTTATGGATGATAAGGCTAGGATCACAGATGATTCTTTGGCTGTGCTCGCTTTGCTTCTGGGTTGCTCTGAAGGTTTGGAAGAGATAAGGAATAGTAGAGTGTTGGTACCTCTTCTGATTGATCTTTTGAGGTTTGGGTCACCCAAAGGGAAGGAGAATTCTATAACGCTTTTGCTGGGGTTGTGCAAAGAAGAAGGTGAGGTGCTGGCAAGGAGGCTATTGGCAAATCCACGAAGCATTCCTTCTCTTCAAAGCTTAGCTGCTGATGGTTCTTTAAGAGCTCGAAGGAAGGCCGATGCATTGCTTAGACTGCTCAATAGGTGCTGCTCTCAACCTCGTCATTTGGTTTGA 2082 0.4337 MDESSLSAMMIFSSFLPTGSLLDSLIHISNEVASMENFPFVQFRNVSSMIRRVKLLSSLFEEIQETDSPLPPSSILCFTELFFVIRRVKLLIQDCKESSSLWGLIQLEFISNQFYVLVKEMGRALDILPLSLLNITVDIREQVELLHKQAKGVELFIDPREFQRREQLLQVMANNNLQNKKNKGFLEFGKVQEILSSIGLRTPSDYDREMSKLEAEAQNQAGTGGLIVMSNINNLISMVTYSKYMIFRDGEKEIDQEDCKPAMSAFTYKSSDCSSSSFSQSTASVPNVPDEFRCPISLDLMRDPVIVSSGHSYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCHENNVPVNEPTSSSSSTLEESNSKGNLKDNAIDHISAKKAAINAVKMTAEFLVGKLATGSAEIQRQAAYELRLLAKTGMDNRRIVAEAGAIPFLVTLLVSHDPRIQEHSVTALLNLSIFDNNKVLIMAAGAVDNIIEVLESGKTMEARENAAAAIFSLTMVDDCKVEIGARPKTIPALVGLLREGSPIGKRDAATAIFNLAVYNPNKARIVNAGAVPLLIDLLMDDKARITDDSLAVLALLLGCSEGLEEIRNSRVLVPLLIDLLRFGSPKGKENSITLLLGLCKEEGEVLARRLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPRHLV 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1415 693 SUPERFAMILY ARM repeat 404 682 IPR016024 -
Dere04g1415 693 Pfam Armadillo/beta-catenin-like repeat 435 472 IPR000225 GO:0005515
Dere04g1415 693 Pfam Armadillo/beta-catenin-like repeat 559 594 IPR000225 GO:0005515
Dere04g1415 693 Gene3D - 381 526 IPR011989 -
Dere04g1415 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 528 570 IPR000225 GO:0005515
Dere04g1415 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 363 IPR013083 -
Dere04g1415 693 SMART arm_5 558 598 IPR000225 GO:0005515
Dere04g1415 693 SMART arm_5 599 640 IPR000225 GO:0005515
Dere04g1415 693 SMART arm_5 515 557 IPR000225 GO:0005515
Dere04g1415 693 SMART arm_5 433 473 IPR000225 GO:0005515
Dere04g1415 693 SMART arm_5 388 431 IPR000225 GO:0005515
Dere04g1415 693 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Dere04g1415 693 SUPERFAMILY RING/U-box 275 362 - -
Dere04g1415 693 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Dere04g1415 693 MobiDBLite consensus disorder prediction 361 380 - -
Dere04g1415 693 FunFam RING-type E3 ubiquitin transferase 287 361 - -
Dere04g1415 693 Gene3D - 527 690 IPR011989 -
Dere04g1415 693 PANTHER U BOX DOMAIN-CONTAINING 45 687 - -
Dere04g1415 693 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Dere04g1415 693 CDD RING-Ubox_PUB 289 341 IPR045210 -
Dere04g1415 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 444 486 IPR000225 GO:0005515
Dere04g1415 693 FunFam RING-type E3 ubiquitin transferase 499 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1415 Dere-ChrDere04 15733881 15735962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1415 19 691 U-box Gene Family AT3G46510 36.686 3.02e-125 385