Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1406 ATGGTTTCAGCCTCAACCGTTGTCGCACAGAGTAGCTCCACCAAATTAGACGACGAATCTCTCGCTACTCGGCAAATGCAAATCTCAGACCTTTCGCCTGGAACACCACTCTGCGCTCAGAAAAGGATGACTGGGGCTAATTTATTAGAAGTCGGAACGCTTCACTTCGATTGGGTTGATCCTAGCAAAGCAGTAACTGGGAATCCCAAGCCCCTCTTGCTCTCAAACTCAAAAGTTTCCCAGAAAACCCTAGGGAGTTCCAAAGGTTCCAAGCCCATGGCTCCCAACCTCGAATGTCGCATGTACGAGGCCAAGTACCCGGAGGTCGACATGGCCGTCATGATACAGGTTAAGAACATTGCCGACATGGGCGCCTACGTCTCATTGCTCGAGTACAACAACATCGAGGGCATGATCTTGTTCTCCGAACTCTCTCGCCGTCGGATTCGGAGTGTCAGCAGCCTCATCAAGGTGGGTCGCATCGAGCCCGTCATGGTCCTCAGGGTCGACAAGGAAAAGGGCTACATCGATTTGAGTAAGAGAAGGGTCTCTGAAGAGGATATTCAGGCTTGCGAGGAGAGGTACAACAAGAGCAAGCTTGTTCACTCTATTATGCGCCATGTTGCCGAGACTATGAATATCGATGTACAGGAGCTGTATGTTAACATTGGATGGCCTTTATATCGCAAATATGGTCATGCTTTTGAGGCATTTAAAATAATTGTGACCGATCCTGATTCTGTTTTAAATTCCCTCACCCGTGAAGTCAAGGACCCTGATGGGCAGGAGGTGACCAAGGTTGTTCCAGCAGTGTCAGACGAAGTGAAGGAAGCTCTAGTAAAGAATATTAGAAGGAGAATGACACCTCAACCCTTGAAAATAAGGGCAGATATTGACATGAAATGTTTTCAGTTTGATGGAGTTCTTCACATTAAGGAGGCCATGCGGAGAGCAGAAGCTACAGGAAATAATGAATGCCCTGTAAAAATTAAACTTGTTGCTCCCCCACTATATGTTCTTACCACTCAGACTCTAGACAAGGAGCAAGGGATATTGGTTCTCAACAATGCTATTGTTGCTTGCACTGAAGCAATAGAGAAACACAAGGGTAAACTTCTTGTGAAGGAGGCACCGAGAGCAGTGAGTGAGCGTGATGACAAGTTGCTTGCTGAACACATGGCCCAGCTACGCCAAGATAACGAGGAAGTCAGTGGCGATGAAGATACTGAGGAAGAAGAAGACACTGGAATGGGAGAGGTTGACGTGGAGAACCAGAATTCTGGGATAACTGAGTGA 1296 0.473 MVSASTVVAQSSSTKLDDESLATRQMQISDLSPGTPLCAQKRMTGANLLEVGTLHFDWVDPSKAVTGNPKPLLLSNSKVSQKTLGSSKGSKPMAPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMNIDVQELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKDPDGQEVTKVVPAVSDEVKEALVKNIRRRMTPQPLKIRADIDMKCFQFDGVLHIKEAMRRAEATGNNECPVKIKLVAPPLYVLTTQTLDKEQGILVLNNAIVACTEAIEKHKGKLLVKEAPRAVSERDDKLLAEHMAQLRQDNEEVSGDEDTEEEEDTGMGEVDVENQNSGITE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1406 431 MobiDBLite consensus disorder prediction 392 431 - -
Dere04g1406 431 MobiDBLite consensus disorder prediction 403 419 - -
Dere04g1406 431 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 93 420 IPR011488 GO:0003723|GO:0003743
Dere04g1406 431 SUPERFAMILY eIF-2-alpha, C-terminal domain 290 406 IPR024055 -
Dere04g1406 431 CDD S1_IF2_alpha 107 182 IPR044126 GO:0003723
Dere04g1406 431 Gene3D Translation initiation factor 2; subunit 1; domain 2 184 286 IPR024054 -
Dere04g1406 431 Pfam S1 RNA binding domain 107 181 IPR003029 GO:0003676
Dere04g1406 431 MobiDBLite consensus disorder prediction 1 21 - -
Dere04g1406 431 Pfam Eukaryotic translation initiation factor 2 alpha subunit 219 347 IPR011488 GO:0003723|GO:0003743
Dere04g1406 431 Gene3D - 95 183 IPR012340 -
Dere04g1406 431 FunFam Eukaryotic translation initiation factor 2 subunit alpha 184 286 - -
Dere04g1406 431 Gene3D EIF_2_alpha 292 414 IPR024055 -
Dere04g1406 431 FunFam Eukaryotic translation initiation factor 2 subunit alpha 96 183 - -
Dere04g1406 431 Coils Coil 393 413 - -
Dere04g1406 431 ProSiteProfiles S1 domain profile. 110 181 IPR003029 GO:0003676
Dere04g1406 431 FunFam Eukaryotic translation initiation factor 2 subunit 1 292 414 - -
Dere04g1406 431 SMART S1_6 108 181 IPR022967 -
Dere04g1406 431 SUPERFAMILY Nucleic acid-binding proteins 99 181 IPR012340 -
Dere04g1406 431 SUPERFAMILY eIF2alpha middle domain-like 183 286 IPR024054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1406 Dere-ChrDere04 15646866 15653169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1406 94 431 Eukaryotic Initiation Factors Gene Family AT5G05470 78.886 0.0 519