Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1405 ATGGCTAGAGGATTGAAGAAGCATTTGAAAAGGCTCAATGCCCCGAAGCATTGGATGCTCGATAAATTGGGCGGTGCTTTTGCTCCAAAGCCCTCATCTGGTCCCCACAAATCCAGGGAATGCTTTCCTCTTATACTTATCTTGCGAGATCGCTTGAAATATGCCCTGACATACCGTGAAGTCATTTCTATTCTGATGCAACGACATGTGCTGGTTGATGGGAAAGTGAAGACAGACAAGACATATCCATCTGGTTTCATGGGTAGACATGTTGCATATGTTGTATCAATCCCAAAAACAAACGAGAACTTCCGCCTTCTGTATGACCCTAAAGGTCAATTCCGTCTCCATTCAATTAGGGACGATGAGGCTAAGTTTAAGCTCTGCAAGGTCCGGTCAGTGCAGTTTGGGCAGAAAGGTATCCCATACCTGAACACCTATGATGGCCGCACTATCCGCTACCCAGACCCTCTTATCAAGGCTAATGACACCATCAAGCTGGATCTGGAGAACAACAAGATCGTTGATTTCATCAAATTTGATGTTGGTAACGTAGTTATGGTTACAGGTGGAAGAAATAAGGGACGTGTTGGAGTGATCAAGAACAGGGAGAAGCATAAGGGAAGTTTCGAGATAATCCACGTCCAGGATGCCACAGGACAAGAATTTGCAACCAGGTTGGGCAATGTCTTCACTATTGGCAAGGGCACAAAACCTTGGGTAACCCTTCCTAAGGGCAAGGGTATTAAACTATCAATCATTGAGGAAGCCAGGAAGAGGATTGCTGCCCAACAAGCAGTCACTGCATAG 810 0.4556 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECFPLILILRDRLKYALTYREVISILMQRHVLVDGKVKTDKTYPSGFMGRHVAYVVSIPKTNENFRLLYDPKGQFRLHSIRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLENNKIVDFIKFDVGNVVMVTGGRNKGRVGVIKNREKHKGSFEIIHVQDATGQEFATRLGNVFTIGKGTKPWVTLPKGKGIKLSIIEEARKRIAAQQAVTA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1405 269 CDD KOW_RPS4 180 234 IPR041982 -
Dere04g1405 269 Gene3D - 1 122 IPR036986 GO:0003723
Dere04g1405 269 Pfam KOW motif 182 215 IPR005824 -
Dere04g1405 269 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 259 IPR000876 GO:0003735|GO:0005840|GO:0006412
Dere04g1405 269 FunFam 40S ribosomal protein S4 127 177 - -
Dere04g1405 269 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
Dere04g1405 269 FunFam 40S ribosomal protein S4 1 122 - -
Dere04g1405 269 Pfam 40S ribosomal protein S4 C-terminus 217 263 IPR032277 -
Dere04g1405 269 Gene3D - 180 250 IPR014722 -
Dere04g1405 269 Pfam Ribosomal family S4e 100 174 IPR013845 -
Dere04g1405 269 Gene3D - 127 177 IPR038237 -
Dere04g1405 269 SMART kow_9 179 206 IPR005824 -
Dere04g1405 269 FunFam 40S ribosomal protein S4 180 250 - -
Dere04g1405 269 Hamap 30S ribosomal protein S4e [rps4e]. 7 243 IPR000876 GO:0003735|GO:0005840|GO:0006412
Dere04g1405 269 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Dere04g1405 269 PIRSF RPS4a_RPS4e 1 246 IPR000876 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1405 Dere-ChrDere04 15642548 15645288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1405 1 267 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 87.640 1.30e-178 490