Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1403 ATGGGTGGCAATTCGCCCTGCGCTTCATGCAAATTGCTCAGACGCCGATGCGCCAAAGACTGCATATTTGCTCCTTATTTCCCCTCTGATGATCCCCAAAAGTTCGCCATCGTTCACAAGGTTTTTGGCGCCAGCAACGTTAGCAAAATGTTACAGGAGCTTCCGGTGCACCAAAGAGCAGATGCAGTGAGCAGTCTGGTGTATGAAGCAAATGCGAGAGTGCGAGACCCTGTGTATGGTTGTGTTGGGGCTATATCGTACCTGCAAAACCAGGTTTCGGAGCTTCAAATGCAGCTTGCAGTAGCTCAAGCAGAGATAGTCTGCATCCAGATGCAGAATGAACCAGTGATGCTGCCAAACCCAGAAATTGATGACCCAGATCAACAGAAACCCTACTTTCTCCAAAACGACCTTCCTCAGTGCCTCAATTTCAACTCTTCTAGCAATGTAATCTATCATGATCACTCTCTCAAGAGAGAGAGCATCTTTGGACATGACTTGGTTTCTTGA 510 0.4745 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEIVCIQMQNEPVMLPNPEIDDPDQQKPYFLQNDLPQCLNFNSSSNVIYHDHSLKRESIFGHDLVS 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1403 169 Coils Coil 85 105 - -
Dere04g1403 169 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Dere04g1403 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 126 - -
Dere04g1403 169 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1403 Dere-ChrDere04 15628758 15629530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1403 3 134 AS2 family AT2G30130 82.576 8.52e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere04g1403 LOB 6.3e-43 No_clan