Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1398 ATGGGTGTTTATGATCAAGGTTCTAACATCAGTTCTCTTCCATTGGATTCTTCTAGGAAGAGGAAAAGTCGAGGTAGGCGGGATGGTTCTAAATCTGTGGCTGAGACTCTGGCAAAGTGGAAAGAATATAATGAGAATCTTGAATCTAGCAAAGGTGAGAGTAAACCAACTCGCAGGGCCCCAGCCAAAGGTTCAAAGAAAGGATGTATGAAAGGTAAAGGAGGGCCTGACAACTCAAGATGTAACTACAGAGGTGTTAGGCAAAGAACATGGGGGAAATGGGTTGCTGAGATTAGGGAACCAAACAGAGGAAGTAGGCTGTGGTTGGGTACATTCTCTACTGCGTATGAAGCAGCCCTTGCATATGATGAAGCAGCTAGAGCCATGTATGGTCCTTCTGCTCGCCTCAACTTTCCTCACATATCAGATTATACTTCTTGCAAGGAGTCACTAAAGGACTCTTCTTCTGCTACAACTTTATCAAGTTCTTCAGTGGCAACTCCTGCAGCTTCTGACACAACTAGTATATCGAATCATTCTGAGGTCTGTGCGGCCGAGGATGTTAAGGTGAAGCTTCAACCTACGATAATAAATGATAGGGATAATGCTCATCACGAAGTTGATGAAGTTGCCTCAGCAAGTATCAAAGTGAAGTCAGAGCCAAATGATGAGCCTGTCGATCTGGCAGATCACGATGGCAGGGATAGTCAATTTGTGAAACCAGAAGTACATGACATTAGAAAGGATGCCGAGGACGAAAGTAAAGATCAGATGGACTATTCTTGGCTTGATGGTAATGATTTGGAGGCTGATTACCTGCAGAATTTCTCTATGGATGAGATGTTTGACGTAGACGAACTCCTGGGGGCGATAGACAGCAATCCAATTGGTTCCTCTGAAACGACGGGTTTTGGTCAAATGGGCCTTATGGGAGACGGAAATCTTCAAAATGAGATACCATCAAGCTTTTCCTATCAATTGCAAAACCCAGATGCTAAGCTGCTGGGAAGTCTGCACCATATGGAACAGACACCATCAGATGTTGATTATGGATTTGATTTTTTGAAATTAGAGGAGCCAGGTGATAATACAGTTATAGGGGAAGTCGAGCAATATCTTGATTTTGGATTACCAGATCTGTGA 1143 0.4348 MGVYDQGSNISSLPLDSSRKRKSRGRRDGSKSVAETLAKWKEYNENLESSKGESKPTRRAPAKGSKKGCMKGKGGPDNSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFSTAYEAALAYDEAARAMYGPSARLNFPHISDYTSCKESLKDSSSATTLSSSSVATPAASDTTSISNHSEVCAAEDVKVKLQPTIINDRDNAHHEVDEVASASIKVKSEPNDEPVDLADHDGRDSQFVKPEVHDIRKDAEDESKDQMDYSWLDGNDLEADYLQNFSMDEMFDVDELLGAIDSNPIGSSETTGFGQMGLMGDGNLQNEIPSSFSYQLQNPDAKLLGSLHHMEQTPSDVDYGFDFLKLEEPGDNTVIGEVEQYLDFGLPDL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1398 380 MobiDBLite consensus disorder prediction 17 33 - -
Dere04g1398 380 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Dere04g1398 380 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Dere04g1398 380 MobiDBLite consensus disorder prediction 45 81 - -
Dere04g1398 380 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Dere04g1398 380 MobiDBLite consensus disorder prediction 213 234 - -
Dere04g1398 380 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Dere04g1398 380 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 18 354 - -
Dere04g1398 380 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Dere04g1398 380 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Dere04g1398 380 MobiDBLite consensus disorder prediction 45 60 - -
Dere04g1398 380 MobiDBLite consensus disorder prediction 1 33 - -
Dere04g1398 380 MobiDBLite consensus disorder prediction 220 234 - -
Dere04g1398 380 MobiDBLite consensus disorder prediction 1 16 - -
Dere04g1398 380 MobiDBLite consensus disorder prediction 156 178 - -
Dere04g1398 380 CDD AP2 81 140 IPR001471 GO:0003700|GO:0006355
Dere04g1398 380 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Dere04g1398 380 Gene3D AP2/ERF domain 82 141 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1398 Dere-ChrDere04 15563342 15564484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1398 8 356 AP2-EREBP Transcription Factor Family AT2G40340 41.918 1.01e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere04g1398 AP2 2.6e-14 CL0081