Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1395 ATGCTTTCAATACGCGCGTCCACTCATCCAACGTTATGCACCCTCACTTGCTCTTTCTCCCAAACTCCTCAGATTTTGCAACTTGGGATGAGGGGTTTAGCAGAGTGGCACCATGTTTTGGATGGGAGGAAAGAAAAACGGAAGCTTTTGTCTAAAACAGACAACCCTTGTCATTTTTTCCGTTGGACCCAATGCTTGTTGTGGTTTCTTGTGCTCCCCATTTTTGCGAAACCAGCTCTGGGCGAAGGGGAGCGTTGGGATGGAGTGGTTGTCACAGAGTCCAACTTCTTAGCACTTCAAGCATTCAAACAAGAACTGGTTGATCCCAAAGGCTTCTTACGAAGTTGGAATGACAGTGGCTATGGAGCTTGTTCCGGAGGTTGGGTTGGCATTAAGTGTGCTCAGGGACAGGTCATTGTTATTCAGCTCCCATGGAAGGGACTGAGCGGGCATATCACAGAGAGGATTGGACAGCTTCAGGGGCTTCGAAAGCTTAGTCTTCATGATAATCAAATTGGTGGTTCAATCCCTTCAACGTTAGGACTTCTTCCCAACCTTAGAGGGGTTCAGCTGTTCAACAATAGGTTAACTGGGTCTATCCCTCCTTCATTAGCATCGTGCCCTCTGCTTCAGTCTTTAGACCTGAGTAACAACCTACTCCAAGGGACAATCCCTGAAAGCCTAGCAAATTCTACTAAGCTTTATTGGCTTAATCTGAGCTTCAATTCCTTTTCGGGTCGATTACCAGCTAATCTCACTCGCTCACCTTCTCTCACTTTCCTTTCTCTCCAACACAATAATCTCTCTGGCTCTGTCCCAAATTCCTGGGGTGGTATACTCAAGAATGACTTCTTTCGCCTTCAAAGTTTGATCCTAGATCACAACTTCTTCTCTGGAAGTATTCCTGCTTCTTTGGGCAGCTTAAGTGAACTCAATGAGATTTCTCTTAATCATAACCAGTTTAGTGGAGCGATACCCAGTGAAATAGGGAGCCTTTATAGGCTTAAAACACTAGATGTTTCTAATAATGCCTTGAACGGAAGCTTGCCTGCTACTGTCTCTAATTTATCCTCACTCGTTGTGTTGAATGTAGAGAACAACCATCTTCAAGACCAAATCCCCGAAGCTCTAGGGAGATTAAAAAATCTTTCTGTTCTAACTTTAAGTAGAAACCAATTTACTGGTCGCATTCCTGCAAGTTTTGGAAATATTTCCAGGCTTACACAGCTTGATTTGTCGCTAAATAATCTTAGCGGAGAAATTCCAATTTCCTTTGACAATTTACGTAGTCTTAGTTTTTTCAATGTTTCTTACAATAACCTCTCTGGTCCTGTCCCCTATCTACTTGTCCGAAAATTTAACTCAAGCTCATTTGTAGGAAATATTCAACTTTGTGGGTACAGTTCTTCAACCCCATGTCCTTCGCATGCACCATCTGATGAAGCCCATGCTCCATCTCCTGAAGTATTAAAACACCATCATCATCAGAAACTAAGTACCAAACACAAAATCCTTATAGCAGCAGGTATTCTCCTCATACTCTTGGTAATACTCTGTGGCGTCCTGTTCGTCTGCCTTATCAGAAAAAATGCAGCCCCAAGGGAAAAGAATGACGGGACAACAGGAAGGGCGGTTGCTACCGGGACAGAAAAAGAAGTTCCTCCAATCACCGGTGAAGAAGAAGCCGGCGGGGAGGCCGGAGGGAAACTAGTCCTCTTTGATGGGGCAATATCTTTTACTGCTAATGATCTCTTGTGTGCAACAGCCGAGATAATGGGGAAGAGCACCTATGGAACTGTCTATAAGACTACATTGGAAGATGGAAGTCAAGTTGCAGTAAAGAGATTAAGGGAGAAGATCGCTAAAAGTCAGAGAGAATTTGAATCCGAAGTCGGTATTCTTGGGAAAATTCGACACCCAAATCTTTTGGCACTGAGGGCCTATTACCTGGGGCCTAGAGGAGAAAAGCTTCTGGTTTTCGATTACATGCCTAAAGGAAGTCTAGCTGCTTTCATACACGCTCGCAGACCTGAAACTGAAACAGCCATGGATTGGCCAACAAGGATGAAAATTGCACAGGGCATGGCTCGTGGCTTGTTGTATCTTCATTCCCACGAGAAGATTATACATGGGAACCTCACATCCAGCAATGTCCTACTGGATGAGAATACAAATGCTAACATAGCAGATTATGGTCTTTCTCGGTTAATGACTAGTGCTGCTAGTTCGAACGTGATTGCTACTGCTGGGGCATTAGGGTACAGAGCACCTGAGCTCTTGAAGCTTAAGAAAGCCAGCACACAAACTGATGTGTACAGCCTTGGTGTGATCTTGTTGGAACTCCTAACAGGGAAGTCACCAGCTGAGCCTATGAATGGAGTAGATTTACCTCAGTGGGTTGCTTCAATTGTGAAAGAGGAGTTGACAAATGAGGTTTTCGACGTGGAGTTGATGAGAGATGCATCCACAATTGGGGATGAGTTACTCAACACATTGAAGCTGGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGGCCGGAAGTTCAGCAAGTTCTCCACCAGCTACAACAGATTAGACCGCTCACTTCTTGGGATCATGGAGCCATCCCTTCCACCAGTCATTAA 2628 0.446 MLSIRASTHPTLCTLTCSFSQTPQILQLGMRGLAEWHHVLDGRKEKRKLLSKTDNPCHFFRWTQCLLWFLVLPIFAKPALGEGERWDGVVVTESNFLALQAFKQELVDPKGFLRSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLSGHITERIGQLQGLRKLSLHDNQIGGSIPSTLGLLPNLRGVQLFNNRLTGSIPPSLASCPLLQSLDLSNNLLQGTIPESLANSTKLYWLNLSFNSFSGRLPANLTRSPSLTFLSLQHNNLSGSVPNSWGGILKNDFFRLQSLILDHNFFSGSIPASLGSLSELNEISLNHNQFSGAIPSEIGSLYRLKTLDVSNNALNGSLPATVSNLSSLVVLNVENNHLQDQIPEALGRLKNLSVLTLSRNQFTGRIPASFGNISRLTQLDLSLNNLSGEIPISFDNLRSLSFFNVSYNNLSGPVPYLLVRKFNSSSFVGNIQLCGYSSSTPCPSHAPSDEAHAPSPEVLKHHHHQKLSTKHKILIAAGILLILLVILCGVLFVCLIRKNAAPREKNDGTTGRAVATGTEKEVPPITGEEEAGGEAGGKLVLFDGAISFTANDLLCATAEIMGKSTYGTVYKTTLEDGSQVAVKRLREKIAKSQREFESEVGILGKIRHPNLLALRAYYLGPRGEKLLVFDYMPKGSLAAFIHARRPETETAMDWPTRMKIAQGMARGLLYLHSHEKIIHGNLTSSNVLLDENTNANIADYGLSRLMTSAASSNVIATAGALGYRAPELLKLKKASTQTDVYSLGVILLELLTGKSPAEPMNGVDLPQWVASIVKEELTNEVFDVELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLHQLQQIRPLTSWDHGAIPSTSH 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1395 875 FunFam Pollen receptor-like kinase 1 663 868 - -
Dere04g1395 875 SUPERFAMILY L domain-like 132 475 - -
Dere04g1395 875 FunFam Leucine-rich repeat receptor-like protein kinase 571 662 - -
Dere04g1395 875 Gene3D Ribonuclease Inhibitor 92 249 IPR032675 -
Dere04g1395 875 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 280 477 - -
Dere04g1395 875 Pfam Protein tyrosine and serine/threonine kinase 589 856 IPR001245 GO:0004672|GO:0006468
Dere04g1395 875 CDD STKc_IRAK 592 847 - -
Dere04g1395 875 ProSiteProfiles Protein kinase domain profile. 586 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1395 875 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 92 275 - -
Dere04g1395 875 Pfam Leucine rich repeat N-terminal domain 97 133 IPR013210 -
Dere04g1395 875 SUPERFAMILY Protein kinase-like (PK-like) 590 861 IPR011009 -
Dere04g1395 875 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 286 859 - -
Dere04g1395 875 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515
Dere04g1395 875 Gene3D Transferase(Phosphotransferase) domain 1 664 866 - -
Dere04g1395 875 SMART LRR_typ_2 332 355 IPR003591 -
Dere04g1395 875 SMART LRR_typ_2 356 379 IPR003591 -
Dere04g1395 875 SMART LRR_typ_2 207 231 IPR003591 -
Dere04g1395 875 SMART LRR_typ_2 159 183 IPR003591 -
Dere04g1395 875 SMART LRR_typ_2 380 403 IPR003591 -
Dere04g1395 875 SMART LRR_typ_2 308 331 IPR003591 -
Dere04g1395 875 SMART LRR_typ_2 256 278 IPR003591 -
Dere04g1395 875 Gene3D Phosphorylase Kinase; domain 1 592 663 - -
Dere04g1395 875 Gene3D Ribonuclease Inhibitor 250 349 IPR032675 -
Dere04g1395 875 Gene3D Ribonuclease Inhibitor 350 475 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1395 Dere-ChrDere04 15536724 15539601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1395 86 861 Receptor kinase-like Gene Family AT3G51740 63.892 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Dere04g1395 PK_Tyr_Ser-Thr 1.8e-42 CL0016