Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1374 ATGTCCAGAGAAAGGGAGAGATTTGAAGAGACAGGCAAGAAGATCAAGAGGGAAGGAGATGTTTCTTGTGAAATGGGAAGAAGACACATGTTGGGTCCCCCAGGAACCCTAAATACCATAACCCCTTGTGCAGCGTGTAAGCTATTAAGACGAAGATGTGCCCAAGAATGCCCCTTCTCTCCCTATTTTTCTCCTCACGAGCCCCAAAAGTTTGCTTCTGTCCACAAAGTCTTTGGTGCCAGCAATGTCTCCAAGATGCTAATGGAGGTACCACTGAGTCAAAGAGCAGATGCAGCAAACAGTCTAGTGTATGAGGCAAATGTGAGGCTAAGAGATCCAGTGTATGGATGCATGGGTGCAATTTCTTCTTTGCAACAGCAAGTTCAATCTTTACAAGCTGAACTTAACGCAGTAAGGTCACAAATACTTACATACAAACTTAGGGAAGCTAATGATAATAATATGATTCCCTCCTCCTCTCATGTTGCCTCAATGCTCCTACCTGCTTCCTGGGCTGTTTCAAATTCAATTGCTGCTTCATCTCCTCCTCCTCTACCTCCCACTTCTTCCTCTTCTTCCATGTACACCCTCCACAGGGCTCCCACCAATTATAACTATTTCAAGTGA 627 0.4482 MSRERERFEETGKKIKREGDVSCEMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPLSQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQVQSLQAELNAVRSQILTYKLREANDNNMIPSSSHVASMLLPASWAVSNSIAASSPPPLPPTSSSSSMYTLHRAPTNYNYFK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1374 208 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Dere04g1374 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 38 174 - -
Dere04g1374 208 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Dere04g1374 208 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1374 Dere-ChrDere04 15372399 15373411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1374 27 165 AS2 family AT2G40470 85.612 1.64e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere04g1374 LOB 1.6e-40 No_clan