Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1371 ATGGATGGAGCTATTGCTGACATGGCGATGGCTAGTGCCTGTTGGATTCGAAGAAGGATCTCCTTATCTTTCTTTAGGTTTTCACTTCCATTAATTAATCTCTCGCTCGCAGAAGCCGTAGAGGAAAAATTGAAATCCAGAGCAGCTTTGTGGGAGATGCTGTTCTCGCTTATATTAACAGTCCTGGGTGCTCCTGTGGCAGTTTTTCCCTTTGTCTACAAGAAAAGGCATCCAGATCCCCTGCGATTGGAGAGAGAATATGACAGATCTGAAAATGTTGATCTTGTGGTAGAAGTTTCTGTTGCAGCATCTCCACATATTGTGATTTTATTCTCGGACATTCTTACTCCACTTTCTGGAATGAATATACCCTTTGATATTGTGAAGGGTAAGCGTCCTGTAATATTTGATCCCATTTGCACAGCTGCCCAGGTTGATCAAGTGAGAGAGTTTGTCCCTGAAGATTCAGTTCCATATGTTGGTAAGGTAATAAAGCTGCAGTCCTTGGTTTTGTGGGGCCTCCTTTCACCCTGGCATCATATGTAGTCCTTCACTCTTTACTACAGAAATTCACAACCTCAATGGCACGATACATCCAATACCAAGCCGAACACGGGAGCTCAAGCTGTTCAGATCTTTGATTCATGGGCAACAGAGCTGAGTCCAACGGATTTTGAAGAATTCAGCTTGCCTTACTTGAAGCAGATTGTAGAAACTGTGGAGAAAACCCACCCACAACTCCCTATAATCCTCTATGCAAGTGGAAGCGGAGGCTTGCTTGAGAGGCTAGCTTTGAGTGGTGCGGACGTGGTTAGCTTGGACTGGACGGTTGATATGGCCGATGGTAGGAGACGATTGGGACCAAATATAGCAGTGCAGGGTAATGTGGATCCTGTTGTTCCTTTTGGCTCAAAATAACAAAAGAGAGAAGAAGAAGCAGAGATGAGCACTGTTAGTAATATTGGCTTCCCTTCAGTATTCGGAGCATCTCTTGGTACTGATGTGCTCTCAAATCAGAGGAAGAAGAAATCGTCACTCAGTTTCATGGTTCAGAACAACCCAGTTAGGTTGAATCATCGAATCTGTTGCAAACTCCATGACAGTGGGATTGAGGAGAACCCCACAAGCAGGATGGCCTCTAATTCCAAGAACAGGATGGAGGAATACAATTTAGCTATGAAGAGGATGATGAGAAACCCTTATGAGTATCACCACGACCTGGGTATGAATTACACACTTATAACTGAGAATTTGATTGTGGGCTCTCAGCCACAGAAACTTGAAGATATAGATCACCTCAAAATGGAAAAAGATGTAGCATACATTCTAAACTTGCAACAGGATAACGATGTGCAGTATTGGGGTATAGACTTACAGTCTATAATCAGAAGATGCCGTGAACTCAGCATTCGTCACATGAGGAGGCCTGCAATAGACTTTGATCCAAACTCCTTGAGAAATGAATTACCAAAAGCAGTTTCATCACTAGAATGGGCTGTTTCCGAGGGAAAAGGAAGAGTCTATGTACATTGCACAGCTGGACTTGGAAGAGCTCCAGCAGTGGCAATTGCCTATTTGTTCTGGTTCTGTGGCATGAACCTAAATGCAGCATATGATATGCTAACTGCAAAAAGACCTTGTGGACCCAATAAAAGAGCAATACGTGGAGCTACTTATGATCTGGCTAAGAATGATCCATGGAAAGAGCCATTTGAGAGTCTTCCAGAAAACGCATTTGAGGATGTAGCTGACTGGGAGAGGGACTTGATTCAGAATCGTGTACGTTCTCTTCGTGGAACTTAA 1803 0.4354 MDGAIADMAMASACWIRRRISLSFFRFSLPLINLSLAEAVEEKLKSRAALWEMLFSLILTVLGAPVAVFPFVYKKRHPDPLRLEREYDRSENVDLVVEVSVAASPHIVILFSDILTPLSGMNIPFDIVKGKRPVIFDPICTAAQVDQVREFVPEDSVPYVGKVIKLQSLVLWGLLSPWHHMXSFTLYYRNSQPQWHDTSNTKPNTGAQAVQIFDSWATELSPTDFEEFSLPYLKQIVETVEKTHPQLPIILYASGSGGLLERLALSGADVVSLDWTVDMADGRRRLGPNIAVQGNVDPVVPFGSKXQKREEEAEMSTVSNIGFPSVFGASLGTDVLSNQRKKKSSLSFMVQNNPVRLNHRICCKLHDSGIEENPTSRMASNSKNRMEEYNLAMKRMMRNPYEYHHDLGMNYTLITENLIVGSQPQKLEDIDHLKMEKDVAYILNLQQDNDVQYWGIDLQSIIRRCRELSIRHMRRPAIDFDPNSLRNELPKAVSSLEWAVSEGKGRVYVHCTAGLGRAPAVAIAYLFWFCGMNLNAAYDMLTAKRPCGPNKRAIRGATYDLAKNDPWKEPFESLPENAFEDVADWERDLIQNRVRSLRGT 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1371 600 Coils Coil 379 399 - -
Dere04g1371 600 Gene3D - 200 337 IPR038071 -
Dere04g1371 600 Gene3D - 61 186 IPR038071 -
Dere04g1371 600 SUPERFAMILY UROD/MetE-like 84 311 IPR038071 -
Dere04g1371 600 ProSiteProfiles Dual specificity protein phosphatase domain profile. 410 567 IPR020422 GO:0006470|GO:0008138
Dere04g1371 600 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 337 579 - -
Dere04g1371 600 Gene3D Protein tyrosine phosphatase superfamily 393 600 IPR029021 -
Dere04g1371 600 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 393 600 - -
Dere04g1371 600 Pfam Dual specificity phosphatase, catalytic domain 433 550 IPR000340 GO:0008138|GO:0016311
Dere04g1371 600 CDD DSP_laforin-like 409 556 IPR045204 GO:0019203
Dere04g1371 600 Coils Coil 587 600 - -
Dere04g1371 600 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 407 552 IPR029021 -
Dere04g1371 600 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 487 546 IPR000387 GO:0016311|GO:0016791
Dere04g1371 600 SMART dsp_5 410 560 IPR020422 GO:0006470|GO:0008138
Dere04g1371 600 Pfam Uroporphyrinogen decarboxylase (URO-D) 99 166 IPR000257 GO:0004853|GO:0006779
Dere04g1371 600 Pfam Uroporphyrinogen decarboxylase (URO-D) 205 338 IPR000257 GO:0004853|GO:0006779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1371 Dere-ChrDere04 15336456 15349826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1371 342 600 Protein tyrosine phosphatase (PTP) family AT3G10940 75.000 8.02e-140 405