Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1358 ATGGCTCTTCTTCAACGTGCTCGCCGCCTTCTGCTGGACCCAGATTCAAACCCAACCGCACCAGATAACATGTACAGAACTAGGGTGACTTATACAAGTGACGCTAATTTTGACACCAACATGGTGATTATATTAGCAGCCTTGTTATGTGCACTAATATGTGCTCTGGGGCTGAATTCAATAGTACGGTGCGCTCTCAGATGCAGCCGTAGGCTGGCTTTTGAGACAGCAGATGAAGCAGCGGCTCGTTTAGCTGCAAAAGGGTTGAAGAAGAGTGCGTTGCGTCAGATACCTATAGCTGTGTGTGGTTCATCTGGTACAGAAATTATAGGCACAGATTGTCCAATATGCCTAGGGGAGTTTATGGACGGCGAGAAAGTGAGGGTGCTGCCAAAATGCAACCATGGGTTCCATGTAAAGTGTATAGACACATGGCTGCTTTCTCATTCCTCTTGCCCTACTTGCAGGCAGTCTTTGCTTCACCAACCCACCATTTCTCAAGCAGTATCTGTACCTGTGAATCAGGCAGCTTGA 534 0.4757 MALLQRARRLLLDPDSNPTAPDNMYRTRVTYTSDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRLAFETADEAAARLAAKGLKKSALRQIPIAVCGSSGTEIIGTDCPICLGEFMDGEKVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLHQPTISQAVSVPVNQAA 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1358 177 SMART FANCL_C_2 110 174 - -
Dere04g1358 177 PANTHER RING-H2 FINGER PROTEIN ATL78 19 162 IPR044602 GO:0016567|GO:0016740
Dere04g1358 177 CDD RING-H2_EL5-like 113 156 - -
Dere04g1358 177 Pfam Ring finger domain 113 156 IPR001841 -
Dere04g1358 177 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Dere04g1358 177 SUPERFAMILY RING/U-box 107 163 - -
Dere04g1358 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 161 IPR013083 -
Dere04g1358 177 SMART ring_2 114 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1358 Dere-ChrDere04 15252743 15253276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1358 9 170 C3H Transcription Factor Family AT3G10910 60.000 8.14e-61 185