LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g1351	ATGACTACTCTTTGCCCTGAAAATGTCTCTGCAAAGAGGGAGAACATCATCAGAGAGCTCGTTGAGGGTAAGGAGTCTGCGTCCCAGCTCAAGGTTCTGATTCAAAAGCCTTTTGGACTTGATGGGCCTCCCACAGCCGAAGAACTCGTGGCCAAAATTCTGAGATCTTTCACCCAAAGTATCTCCGTTCTCACTTCCTCCAAAGCCGGCGGGGAGTTCAGTCGGAATTCGGCGATTTCCGGTGAGAATGGGTCGCCGGTGTGGACTGCTTCGTGCAATGATAGGAGGTCTGATGATTCCGGCGAGAGCAGGAAGAGATCGTCGCCGGCTACGAAGGATCGGAGAGGCAGCTACAAAAGAAGGAAGATTGCACATACATCGACCAAAGTCTCCCACACTATTGATGATAATCATGCATGGAGAAAGTACGGGCAGAAAGAAATCCTCAATTCGAAATTCCCCAGGAGTTATTTCAGGTGCAGTCGCAAACATGATCAAGGTTGCAAGGCAATCAAACAGGTTCAGAAGATACAGGAGAATCCAGAAATGTACCGAACAACGTACTTTGGATTTCACACATGCCAGGGCATCCTCAAGGCTCCTGAAATGGTCACAGATTCTGGTAATTGGGAATCATTTCCTGTGACCGAATCTATGGTACCAAACGATGATCAAAAGGTTCATGGACGTCCTCCTTTGATCAGCTCATTATCAGTTTCTCTCGTAAAGCAAGAATATCCCAAGGAAGACACATCACTAAGTGACATAACAGACAACTTGGAACCCAGTTTGTGGTCAGATTTGGAGGACTTTGAATTTTCTGAGCTTTCAATTGTGCCCTCAAAGATAGCATCTGATCATAATGCTGATACTGTCTATTCAAGTACTACAGGCACTGTAGATCTCGGGGTGGAGTCTGCTGGTTTTGGCACTGATGATCATTTCCACTTTGTTTGA	957	0.4629	MTTLCPENVSAKRENIIRELVEGKESASQLKVLIQKPFGLDGPPTAEELVAKILRSFTQSISVLTSSKAGGEFSRNSAISGENGSPVWTASCNDRRSDDSGESRKRSSPATKDRRGSYKRRKIAHTSTKVSHTIDDNHAWRKYGQKEILNSKFPRSYFRCSRKHDQGCKAIKQVQKIQENPEMYRTTYFGFHTCQGILKAPEMVTDSGNWESFPVTESMVPNDDQKVHGRPPLISSLSVSLVKQEYPKEDTSLSDITDNLEPSLWSDLEDFEFSELSIVPSKIASDHNADTVYSSTTGTVDLGVESAGFGTDDHFHFV	318

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g1351	318	SUPERFAMILY	WRKY DNA-binding domain	132	195	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1351	318	Pfam	WRKY DNA -binding domain	135	195	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1351	318	Gene3D	WRKY domain	118	196	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1351	318	MobiDBLite	consensus disorder prediction	75	94	-	-
	Dere04g1351	318	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	19	214	IPR044810	GO:0003700
	Dere04g1351	318	MobiDBLite	consensus disorder prediction	95	114	-	-
	Dere04g1351	318	MobiDBLite	consensus disorder prediction	75	131	-	-
	Dere04g1351	318	ProSiteProfiles	WRKY domain profile.	129	192	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere04g1351	318	SMART	WRKY_cls	134	196	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g1351	Dere-ChrDere04	15192302	15194052	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g1351	11	275	WRKY Transcription Factor Family	AT3G56400	40.070	1.49e-50	167

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Dere04g1351		WRKY	8.2e-24	CL0274