Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1347 ATGGCCAGTTTAGCTTCAAAGCTTCGTATCCAATCCACTGACGTCAAAGCCGCCGCCATGTGGGGTGCTGCCGCTGCCTCCGGTGCTCTCTATCTGATTCAGCCATGGGGTTGGTTGAGGAAGACCTTCTTGGAAAAGCAAGAGCCTGATCAAAAGCAACACCAACCGTCGGATCTTTCCTCATCTGCCATATATACCTACCTCGCTCTCTGCTTCGCCCTCTTCCTGATCTCTTTTCGCTGGCGGTCCACAGCAGCCGCTGGAGACTTCATCCTGGGGTCTTCGATGGAGAAGGAATTGATCGGATTGTACGAAGCGGTGAAGAAGGCGGCGGATGCCGCGAGCTCCACCGATAGCGAAGCTGAAGAAAGTCGATGCCTCGATGCGTTTGAGCGGCTAAAGAAATTCCCCGTCAATTATCAGATTCTTGTTTCCACCCAGGTGGGCAAGCATCTTAAGGTGCTAACAAAGCATCCAAGGAAGAAAATCCGGGCTTTTGCTGTTGACCTGATTGAGATATGGAAAGACATAATTATCAAGGAAACAAGCAAAAATAAGAATGGGAGCTCACATAATAATGTGGAGTTGGCAAATGGGGACAAAGCTACAGCTGAGAAGGTTCAGAAGACCCATTCGGTGAAGGTTGAGAATAATTCAAAGGCCAACATTGTCAAGGTTGAAAAAACTGATAGGAATGGTATGTCAAGCTCTACAAATGTAAAGAAGGCACAAGTTTCAGATGTCAAAAGTGAGAAAACTGTTTCTGCAGCAAATGTTAAGGTAGAAAAGATATCCAAGGACGAGAAGCTAGTTTCTGGAGTGAAGAGGCCATCCTCTAGCCCTGCTGCTCCACCAAAGCTGAAAACTATGATCAAATCTAATGATGTGATGCGAGACAAAATAAGGGAAATTCTCCAAGAGGCATTCTCAAAGGTTTCTGGAGAGGCTGATGAAACAATGATGGATGAAGTTAATGCTTGTGATCCTATTCGTGTTGCCGTTACTGTGGAGTCTGTACTATTTGAGAAGTGGGGTCCTTCTAATGGGGCTCAAAAGGTCAAGTATAGGTCGTTAATGTTTAACCTCAAGGATCCGAATAACCCGGATTTCCGGAGAAGAGTTCTACTTGGAGAATTTCAACCAGAGCGGCTGATCAACATGAGCACAGCAGACATGGCTAGCGATCAAAGGAAGCAGGAGAATGAGAAACTCAAACAGAAAGCTTTATTTGAGTGTGAGCGTGGACAGCAACCGAAAGCCACAACTGATCAATTCAAGTGTGGTCGATGTGGTCAAAGAAAGTGTACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACGTGCGTCGCTTGTAATAACCGTTGGAAGTTCTGTTAG 1398 0.4592 MASLASKLRIQSTDVKAAAMWGAAAASGALYLIQPWGWLRKTFLEKQEPDQKQHQPSDLSSSAIYTYLALCFALFLISFRWRSTAAAGDFILGSSMEKELIGLYEAVKKAADAASSTDSEAEESRCLDAFERLKKFPVNYQILVSTQVGKHLKVLTKHPRKKIRAFAVDLIEIWKDIIIKETSKNKNGSSHNNVELANGDKATAEKVQKTHSVKVENNSKANIVKVEKTDRNGMSSSTNVKKAQVSDVKSEKTVSAANVKVEKISKDEKLVSGVKRPSSSPAAPPKLKTMIKSNDVMRDKIREILQEAFSKVSGEADETMMDEVNACDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDPNNPDFRRRVLLGEFQPERLINMSTADMASDQRKQENEKLKQKALFECERGQQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVACNNRWKFC 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1347 465 CDD Zn-ribbon_TFIIS 418 464 - -
Dere04g1347 465 ProSiteProfiles Zinc finger TFIIS-type profile. 423 463 IPR001222 GO:0003676|GO:0006351|GO:0008270
Dere04g1347 465 NCBIfam transcription elongation factor S-II 112 465 IPR006289 GO:0003676|GO:0005634|GO:0006368
Dere04g1347 465 SMART TFS2_5 103 180 IPR003617 GO:0005634
Dere04g1347 465 Gene3D - 394 465 - -
Dere04g1347 465 ProSiteProfiles TFIIS N-terminal domain profile. 105 181 IPR017923 -
Dere04g1347 465 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 193 IPR035441 -
Dere04g1347 465 ProSiteProfiles TFIIS central domain profile. 297 420 IPR003618 GO:0006351
Dere04g1347 465 Pfam Transcription factor S-II (TFIIS), central domain 294 411 IPR003618 GO:0006351
Dere04g1347 465 Pfam TFIIS helical bundle-like domain 131 178 IPR017923 -
Dere04g1347 465 SMART Cys4_2 425 464 IPR001222 GO:0003676|GO:0006351|GO:0008270
Dere04g1347 465 SUPERFAMILY Zinc beta-ribbon 404 463 - -
Dere04g1347 465 SUPERFAMILY Elongation factor TFIIS domain 2 282 395 IPR036575 GO:0006351
Dere04g1347 465 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 97 193 IPR035441 -
Dere04g1347 465 ProSitePatterns Zinc finger TFIIS-type signature. 427 462 IPR001222 GO:0003676|GO:0006351|GO:0008270
Dere04g1347 465 FunFam Probable Transcription elongation factor S-II 394 465 - -
Dere04g1347 465 CDD TFIIS_I 104 178 - -
Dere04g1347 465 Gene3D - 279 393 IPR036575 GO:0006351
Dere04g1347 465 SMART mid_6 299 403 IPR003618 GO:0006351
Dere04g1347 465 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 109 465 - -
Dere04g1347 465 Pfam Transcription factor S-II (TFIIS) 425 463 IPR001222 GO:0003676|GO:0006351|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1347 Dere-ChrDere04 15129917 15136938 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Dere04g1347 TFIIS_M 3.2e-32 No_clan