Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1345 ATGATCCAAGCGGTTTGCGATTTTCGCAAACTCGCGAACTCGCGCGTGAGACTCATTTCCCAGCTGTATGCTCGGTTCCTGAATTCCTGCTCTGTTCAGTCAGTTTTGTATCTCCAGGATTTGAACCCCAGAGGAGCGGTGACCAGTATGGGTAGACGAAAACAAAGTAGACCACATCGATTAGGCGGAATAATACTAGAAACACATGCAGCAGCTGAAGCAGAATTGGAAAAACAGAAAATAGTGGAAACAGAGGGAGAAGTAAAGGAAGATCTTGGTGACATTGACGAACCTTACTTTGTGGAAGTTGATAGGTCCAATTGGTTATCAAACGAACACCTTGATATTTCTGAAGTTGTTCTAACTAATTTGAATTTGAGAGAGGGTTTTTCTGGTTTTGAACTTTCTGAGGACTTTTATCAGGATTTTCAATATTCTTTAAGATTTCGGGTGTGTAATGCCAATCATATCCTTGGTCGAATTAAATTAGGTCATTGGCCTGTATTGGCTTATACTGACATCCATCTTGAGTTTGTAAAAAAAGTAACGATGGAACATATGGAAACATGTACAGTGCTGTTATCTGGGGTTTTTGATGGACCGGATGAAGGTGTCTCTGGTCTTATTCACTTGGCAAGTTTGAAATTTTTTACATTGAGGCCAGTTCTCGGGATTAGATTTTCTGAGGACATGTTCTCCCTCAGGTTAAGGGTTGAGGTACTAAAGAGTGCCTTTGATGCATGCACGTCACTTCTAGATGGTTCCAGACAACTATGGAAAAAGAGTATGATGAATGTCATGTCCTGGCTACGTCCTGAAATTATGACATCAGAAATTAGGTATGAGGCTGATAACTATATGAAAATTGAAGTTGATCCACAGACAGAGATGAGAGACGACACTTGCCATGCCCAGAAACATGTGAGGTTTGACCCTGCAGGTTTCTATGAAGCCATTAGGCCTTCAAAATCAGAACCAATGCTTGAAGATGACATACCAGATTTACTTCCTGAATTGAGACCATATCAACGACGTGCAGCTTTTTGGATGGTAGAAAGAGAGAGAAAAAGAGCCAGAGGTCAGGAGGAAAGGGAGAGAAGTCATTTTCATTCTCCTTTATGTGTGCCTGTTGATTTTATTGACGCGAATTCTAAAATGTTCTTTAATCCATTCAGTGGAAATATTTCCTTGTACCCGGAGACTTCTGCACCTTATGTGCTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACAGTTGAACTGCTTGCTTGCATCTTTGCTCACCGGAGATTGGAATCTGGAAGTGATGTTCCTGTTGATTTAGAGTTGCAAGTTAATGGGGATCATCAAGTCAATTTTAAAAGACTCAAAAGAGATCGTGTGGAGTGTACATGTGGAGCTGTGAGTGAAAGCCTTAAATACAAAGGTCTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCTCCTAAAGGAAAATCACTGAAATCAAAACAGGGATCTGAAAGCAAGAAATTTAAGACCATCGTAGCTGTGAGGGATGGGGAATATGTATGCCAAATGTGCTCTGAACTAATACAAGCTACCGAATCTCCCATTGCTTCTGCTGCCACTCTTATTGTTTGTCCTGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATCCGTCATACACGTCCAGGCTCCTTGAAAACTTATGTTTATGAAGGCGTGCGAGACACATCTTTCACCAATACATCTCTGGTGAATATCAGTGAACTTGCCTCTGCTGACATTGTATTAACAACATATGACGTACTTAAAGAGGATTTGTCTCATGATTCTGATAGGCATGAAGGTGATCGGCACTTTTTGAGATTTCAGAAAAGGTACCCAGTTGTCCCAACTCTTCTTACCAGAATATACTGGTGGAGGATTTGTCTGGATGAGGCACAAATGGTGGAGAGTAATGCTGCAGCTGCCACGGAAATGGCTCTGCGGCTCTATGCAAAGTATCGTTGGTGTATTACAGGAACCCCCATTCAGCGAAAGCTTGATGACTTGCATGGACTATTACGATTCCTTAAAGCAAGTCCTTTCGATATTTACCGGTGGTGGACTGATGTTATTCGAGATCCTTATGAGAAGGGAGATGTTAGAGCCATGGAATTTACACATAAAATTTTCAAGCAAATCATGTGGCGCTCTTCAAAAGAACATGTTGCAGATGAGTTGCAGCTTCCTTCCCAGGAGGAGTGCCTCACTTGGCTCACTCTCTCACCAGTAGAAGAGCACTTTTACCAAAGGCAACACGAAACTTGTGTTAACTATGCTCATGAAATTATTGAAAGTTTGAGAAATGATATTCTCAACAGAAGAGTCCCAGGTTCTATTCCTTCAGATGATTTTTCTGATTCTTTCATCACTCACACAGAGGCAGGGAAGTTATTGAATGCTCTGTTGAAGCTTCGCCAGGCTTGTTGTCACCCACAGGTTGGAAGCTCTGGGTTGCGCTCTCTGCAGCAGTCACCCATGACCATGGAGGAAATACTGATGGTTCTTATAAGCAAGACAAAGATAGAAGGTGAGGAAGCTCTTAGGAGGTCAGTTGTTGCTTTAAATGGACTTGCAGCAATAAGCATAATGCAGAAGGAATTTACTCAAGCAGCATTGTTGTATAATGAAGCACTGACTTTGGCTGAAGAGCATTCCGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAATCTGGCTGAAATACTCCCGCAGACTACAAACACCTCCCTAAAGCTCCCCTCCAAAGGAAAGCAGTTCTCTAAAACTTCTGAATTTAAGACAACAAGAAAACGTACCCTTGAAAAGGTTGATTATTGTTTTGTTAAGAGGAAGAAAGGGAATGACTTTGATGACATAGATTGTAAAACAGCTTCTGGAGAAGAATTAAATGCTACATCTAGCTTATCTGAACATGAGTTAAATGGGTATCAAAAATTTGATGGTGCATCTATCAGTTCTTTACAATCTTTGATGGCAGAATGTGAAGATTCAAAACAGAAATACTTATCTGTGTTCAGTTCAAAGCTATCTGCAGTCCAACAGGAGTTTCAAAAAGCTTATCTGCAGGTCTGTAATTCATATAGTGACAGTGCAAATGAATCTGCGACTTGGTGGTTAGAGGCACTTCACCATGCTGAGCAAAACAAGGATTTCTCCAATGAGTTGCTTAGGAAGATTGAAGAAGCAATTTCAGGAACTTTAAACAATTCAAAGTCCCCAAGAATTGCTGCTCGTTTCCGAAGCATACACTCTCTAAAGTATCAAATCCAGACAGGTATGGATCAGTTAGAAGCTTCTAGGAAGGTGCTACTTGATCGACTTTTAGAAATTGATCAGACGATGGAAAAACCAAAAGAAGAGGACATTGAACGCGTGGGTAAATGTCAAAATTGCCAACCTGATTCTGATGGTCCACCATGCATTCTGTGTGAACTTGATGAATTGTTTCAGGATTATGAAGCAAGACTCTTTGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTTGCAGAAGAAAAATTTTGCACTGAATCGTTTCCTTTCAAAGCTATCACAGTCTAATCAAAGTTCAACAGCATCTGATATTGGCAATGAAGAATCCAAAAAAAGAAATGTTGGAGAAAGAGTTGTGGTTTCAAGATCAGCATCTCAATTGGAAGTTATTCTTGGAGTTCTGAAGAATTACTGCAAGGCTAGATTGGGAAGAGATAGTGTTTCAGCAGCCACCAAACATTTACATATTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTCTAGCATTAGCCCAAGCTCAATATCTGCGTGCCCATGATGAAATCAAGATGGCAGTGTCCCGGTTGCACCTAAGGGCAAATGAGAATGACAAGTCTCTTGATGCTTTTGGTGAAAATGAATTATCTGCAGCCAGTTCCAACTTTTCACATGATAAGTTTATGTCGTTGGCCTTATTAACACAGATAAAAGGAAAACTGCGCTACTTAAAGGGTTTGGTACACTTGAAACAAAAACAGCCATCGGACAGTCAAGAAAGTTCTTCATTCACTCAGGACACTACTGCAATATCAAATTCCACAGAAGAGAAGGGTGCTCCTGTATCTAAAGCCGATGAGGATTCATGCCCAGTTTGCCATGAAAAGCTAGGCAGCCAGAAAATGGTTTTTCAGTGTGGGCATGTCACATGTTGCAAATGTCTATTTGCTATGACTGAGCAAAGGCTTCAAGATAGCAAGTTTCATAAATGGGTGATGTGCCCAACATGCCGACAGCACACTGATTTTGGAAACATTGCTTATGCTGTTGATGGACAGAATGAATCTTCCAAATCTATGCTGCAGAATGTTGACTGCAGTGAAAAATGTGAATCATCCATTAGTGTTCAGGGTTCATACGGAACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGCATCAAATCTACAGATCCTAAAGCAAAAGTCCTCGTATTTTCCAGTTGGAATGATGTTCTTGATGTATTGGAACATGCTTTTGCAGCCAATAACATCACCTACATTCGGATGAAAGGCGGCAGAAAATCACATGTTGCCATCAGTCAATTTAGAGGACAGCAGAATGACAAAAAAGTAGGTAGCAACTTGATATCCCAGAAATCAACATCAAAATTTGTTCAGGTTTTATTAATTTTAATTCAACACGGAGCCAATGGCCTCAATCTTCTAGAAGCACAGCATGTGGTCCTTGTGGAGCCATTACTCAATCCTGCTGCTGAAGCACAAGCAATCAGCCGTGTGCACCGTATAGGACAGAAAAATAAGACTCTCATTCATCGTTTCATTGTGAAAGACACTGTTGAAGAGAGTATATTTAAACTGAACAGAAGCAGGGGTAGCCATTCATTCATCAGTGGTAACACAAAAAATAATGACCAACTTATCCTGACCCTGAAAGATGTTGAATCCTTGCTAGCAACAGCCCCATTAACGATACGAGAAAATGATGAAAATCCTACTGCGAGTCTAAGGCACTTGCCACCTTCAATGGCCGCGGCTATTGCTGCTGAGAGGAGACTCAATGAACAAAGGACATGA 5169 0.4098 MIQAVCDFRKLANSRVRLISQLYARFLNSCSVQSVLYLQDLNPRGAVTSMGRRKQSRPHRLGGIILETHAAAEAELEKQKIVETEGEVKEDLGDIDEPYFVEVDRSNWLSNEHLDISEVVLTNLNLREGFSGFELSEDFYQDFQYSLRFRVCNANHILGRIKLGHWPVLAYTDIHLEFVKKVTMEHMETCTVLLSGVFDGPDEGVSGLIHLASLKFFTLRPVLGIRFSEDMFSLRLRVEVLKSAFDACTSLLDGSRQLWKKSMMNVMSWLRPEIMTSEIRYEADNYMKIEVDPQTEMRDDTCHAQKHVRFDPAGFYEAIRPSKSEPMLEDDIPDLLPELRPYQRRAAFWMVERERKRARGQEERERSHFHSPLCVPVDFIDANSKMFFNPFSGNISLYPETSAPYVLGGILADEMGLGKTVELLACIFAHRRLESGSDVPVDLELQVNGDHQVNFKRLKRDRVECTCGAVSESLKYKGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGSESKKFKTIVAVRDGEYVCQMCSELIQATESPIASAATLIVCPAPILPQWHDEIIRHTRPGSLKTYVYEGVRDTSFTNTSLVNISELASADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVVPTLLTRIYWWRICLDEAQMVESNAAAATEMALRLYAKYRWCITGTPIQRKLDDLHGLLRFLKASPFDIYRWWTDVIRDPYEKGDVRAMEFTHKIFKQIMWRSSKEHVADELQLPSQEECLTWLTLSPVEEHFYQRQHETCVNYAHEIIESLRNDILNRRVPGSIPSDDFSDSFITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRRSVVALNGLAAISIMQKEFTQAALLYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPQTTNTSLKLPSKGKQFSKTSEFKTTRKRTLEKVDYCFVKRKKGNDFDDIDCKTASGEELNATSSLSEHELNGYQKFDGASISSLQSLMAECEDSKQKYLSVFSSKLSAVQQEFQKAYLQVCNSYSDSANESATWWLEALHHAEQNKDFSNELLRKIEEAISGTLNNSKSPRIAARFRSIHSLKYQIQTGMDQLEASRKVLLDRLLEIDQTMEKPKEEDIERVGKCQNCQPDSDGPPCILCELDELFQDYEARLFVLKNERGGIISSAEEAVDLQKKNFALNRFLSKLSQSNQSSTASDIGNEESKKRNVGERVVVSRSASQLEVILGVLKNYCKARLGRDSVSAATKHLHIFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRANENDKSLDAFGENELSAASSNFSHDKFMSLALLTQIKGKLRYLKGLVHLKQKQPSDSQESSSFTQDTTAISNSTEEKGAPVSKADEDSCPVCHEKLGSQKMVFQCGHVTCCKCLFAMTEQRLQDSKFHKWVMCPTCRQHTDFGNIAYAVDGQNESSKSMLQNVDCSEKCESSISVQGSYGTKIEAVTRRILCIKSTDPKAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKSHVAISQFRGQQNDKKVGSNLISQKSTSKFVQVLLILIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIFKLNRSRGSHSFISGNTKNNDQLILTLKDVESLLATAPLTIRENDENPTASLRHLPPSMAAAIAAERRLNEQRT 1722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1345 1722 SMART ring_2 1407 1454 IPR001841 -
Dere04g1345 1722 Coils Coil 1067 1087 - -
Dere04g1345 1722 ProSiteProfiles Zinc finger RING-type profile. 1407 1455 IPR001841 -
Dere04g1345 1722 SMART ultradead3 335 707 IPR014001 -
Dere04g1345 1722 SUPERFAMILY FYVE/PHD zinc finger 461 533 IPR011011 -
Dere04g1345 1722 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1503 1679 IPR001650 -
Dere04g1345 1722 SUPERFAMILY RING/U-box 1400 1459 - -
Dere04g1345 1722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1392 1474 IPR013083 -
Dere04g1345 1722 Gene3D - 400 448 IPR038718 -
Dere04g1345 1722 Gene3D - 532 759 IPR038718 -
Dere04g1345 1722 SMART PHD_3 464 532 IPR001965 -
Dere04g1345 1722 MobiDBLite consensus disorder prediction 1371 1405 - -
Dere04g1345 1722 CDD SF2_C_SNF 1497 1639 - -
Dere04g1345 1722 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 50 1721 - -
Dere04g1345 1722 ProSitePatterns Zinc finger PHD-type signature. 465 531 IPR019786 -
Dere04g1345 1722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 1655 IPR027417 -
Dere04g1345 1722 Pfam Helicase conserved C-terminal domain 1505 1628 IPR001650 -
Dere04g1345 1722 SMART helicmild6 1531 1628 IPR001650 -
Dere04g1345 1722 Pfam SNF2-related domain 342 834 IPR000330 GO:0005524|GO:0140658
Dere04g1345 1722 CDD DEXQc_SHPRH 339 738 - -
Dere04g1345 1722 Gene3D - 1475 1698 IPR027417 -
Dere04g1345 1722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 737 IPR027417 -
Dere04g1345 1722 MobiDBLite consensus disorder prediction 1371 1396 - -
Dere04g1345 1722 CDD PHD_TCF19_like 467 531 - -
Dere04g1345 1722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 451 531 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1345 Dere-ChrDere04 15094165 15117467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1345 539 832 RAD5 or RAD16-like Gene Family AT5G22750 32.107 1.65e-38 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere04g1345 SNF2_N 6.5e-86 CL0023