Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1340 ATGGTTTCCTCACAATTATCTACCTTGAAGGGGAATTGTTTGCAGAAGTCTTTTCTGAATCAGGTGCTTCTTCCAAGTGAATCATATGATGTTTTGCCTTCCGATTATGACGAGTCAGATTTTTCTGATGTGTTTGGTTCAGGCCCAGTTCATGCCTCAAAAGAACTGAGTTATGAGAAAACTAGAAACTTGGTGGCTGCACCAAATCCAAATAAAAATATTTACGATGATTCTGCTGTCATTCACAGCCGATCCCATTCTCTAGTGAGTCCCACAGCCTGTATTAGTCGGTCCTTGGAGCTTGCCAAAATCAACTTACGTGAGACGGAGGATGCACTGGATCTGGTGGAGGAAGTCTGTAGAGAAACACAAAATGAATTCAAGGAAGAGAATTCTAATGAACAATTCAATAATATCAGTTTGAAGTATCAAAGTGTTGGACTCGAGGATTTTGAACTATTGAAAGTTCTTGGGCAAGGTGCTTTTGGAAAGGTGTACCAGGTGAGGAGGAGGGGCGCATCAGATATTTATGCAATGAAGGTCATGCGCAAAGACAAGATCATGCAGAGAAATCACGCTGAATATGTGATATCTGAAAGGGATATATTGACAAAAGTTGATCACCCTTTTATTGTGCGGCTTAGATACTCGTTCCAGACCAAATACAGGTTGTACCTTGTGCTTGACTTCGTTAATGGTGGTCACCTTTTCTTTCAGCTTTGCGGCCAAGGCCTATTCAGGGAGGATTTGGCTCGCTTTTATGCTGCAGAGATTGTTTTGGCTGTTTCTCATCTTCATGCAAATGGTATAATGCACAGGGATCTTAAACCTGAAAATATTCTTCTGGATGCACATGGCCATGTGGTGTTGACGGATTTCGGCCTGGCTAAGCAATTCAATGAGAATGCAAGGTCAAATTCTTTGTGTGGAACTTTAGAATACATGGCCCCTGAAATTCTTTGGGGGAAAGGACATGACAAGGCAGCTGATTGGTGGAGTGTGGGAATTCTACTGTTTGAAATGCTTACAGGGAAGCCTCCCTTTACCAGTGGAAATAGACAAAAGATTCAGCAAAAGATAATAAAGGACAAGATTAAGCTTCCAGGGTTTTTGTCAAGCGAGGCACATTCACTATTAAAAGGGTTGTTGCAGAAAGAAGCCAGCAAACGCCTAGGCAGTGGACCAAGTGGTAGCGAGATGATTAAGAGCCACAAGTGGTTTAAATCCATTAACTGGAAAAAATTAGAAGCTCGAGAAATTAGGCCCAGCTTTGTCCCAGAAGTTGCTGGGAAGCATTGTGTTGCAAACTTTGAGGACCGGTGGACTAACATGCCTTTGCTGGATTCTCCTGCTGCTAGTCCCAAATTCAATGACAACCCCTACAAGGGGTTCAATTGGGTACTCTAG 1407 0.4257 MVSSQLSTLKGNCLQKSFLNQVLLPSESYDVLPSDYDESDFSDVFGSGPVHASKELSYEKTRNLVAAPNPNKNIYDDSAVIHSRSHSLVSPTACISRSLELAKINLRETEDALDLVEEVCRETQNEFKEENSNEQFNNISLKYQSVGLEDFELLKVLGQGAFGKVYQVRRRGASDIYAMKVMRKDKIMQRNHAEYVISERDILTKVDHPFIVRLRYSFQTKYRLYLVLDFVNGGHLFFQLCGQGLFREDLARFYAAEIVLAVSHLHANGIMHRDLKPENILLDAHGHVVLTDFGLAKQFNENARSNSLCGTLEYMAPEILWGKGHDKAADWWSVGILLFEMLTGKPPFTSGNRQKIQQKIIKDKIKLPGFLSSEAHSLLKGLLQKEASKRLGSGPSGSEMIKSHKWFKSINWKKLEAREIRPSFVPEVAGKHCVANFEDRWTNMPLLDSPAASPKFNDNPYKGFNWVL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1340 468 Gene3D Transferase(Phosphotransferase) domain 1 231 426 - -
Dere04g1340 468 SMART pkinase_C_6 408 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
Dere04g1340 468 ProSitePatterns Protein kinases ATP-binding region signature. 157 180 IPR017441 GO:0005524
Dere04g1340 468 SMART serkin_6 151 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1340 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Dere04g1340 468 CDD STKc_AGC 157 407 IPR045270 GO:0004674|GO:0005524
Dere04g1340 468 FunFam Non-specific serine/threonine protein kinase 148 246 - -
Dere04g1340 468 Coils Coil 99 133 - -
Dere04g1340 468 Pfam Protein kinase domain 151 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1340 468 SUPERFAMILY Protein kinase-like (PK-like) 135 453 IPR011009 -
Dere04g1340 468 Gene3D Phosphorylase Kinase; domain 1 148 448 - -
Dere04g1340 468 PANTHER RIBOSOMAL PROTEIN S6 KINASE 108 453 - -
Dere04g1340 468 ProSiteProfiles AGC-kinase C-terminal domain profile. 408 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
Dere04g1340 468 FunFam Non-specific serine/threonine protein kinase 231 426 - -
Dere04g1340 468 ProSiteProfiles Protein kinase domain profile. 151 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1340 Dere-ChrDere04 15054769 15057636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1340 1 467 AGC Kinase Gene Family AT3G08720 62.924 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Dere04g1340 Pkinase 5.3e-75 CL0016