Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1334 ATGTGGCTCAGATGGACTTTAATGGAATTGGACCTTACTGGCTTTGAAAAGGCTACGATGTGTAAGCTATGTTGAGAAAACACAGCCCATCAACAATACTTGGGTATTGATTTTTGGTTGGCCCCTCAAATAGCTGTGGTTAAGGTGAATGTTGATGGCATGTATCATCAACATATGGGCAGAGCAGGCTGTGGCTTTGTGTTCAGAGACCATGAGGGTGCTTTGCTGGAAATGTATAGCTTTGATTTTGAGGAGATGTGCCCAAGTGGGAAGGACTTGGTTCCCCCATTTCCTTTGGTTTTTGTTCTGGATTCAAACTGTGCTAATTCACCGATAGGTGCGACTGAGGCTGTGCAAAGGATAGCTCCGAAGTTCGGGTTTGGGCCTACCGCAAAGCCCATCCTTGAAGATCCTTGGAGTCAGCATTTATCGGAGGCCCTAAGCCATGAAATAATGAAAAGAAAAGGCAGCCTCTATATAAACATTCTAGGGTTTATAGTCGGCGCAATTGCAGAGCTTGAATCCAACGCGTCCGAGAGAGACTTCGCAATGGGGAGGAGACCTGCAAGGTGTTACCGGCAAATAAAAAACAAACCATACCCCAAATCACGCTTTTGCCGTGGTGTTCCTGATCCCAAGATCAGGATTTATGATGTTGGAATGAAAAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTCCATCTTGTTAGCTGGGAGAAGGAAAATGTTTCTAGTGAAGCATTGGAAGCTGCTAGGATTGCCTGCAACAAGTATATGGCCAAATTTGCTGGAAAGGATGCATTCCATTTGAGAGTTAGGGTGCATCCATTCCATGTTCTGAGAATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACAGGAATGAGAGGTGCATTTGGAAAGCCACAAGGTACTTGTGCTAGAGTTGCCATTGGTCAGGTCCTTCTTTCTGTCCGCTGCAAGGACAGCAACAGCCATCATGCCCAGGAAGCCCTCCGCCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATTATAGTTAGCAGGAAATGGGGGTTCACCAAGTTTAACCGTACTGATTATCTGAAATACAAGTCAGAGAACAGGATTGTGCCAGATGGTGTGAATGCAAAGCTACTTGGATGCCATGGACCGTTGGCTAACCGTCAACCTGGAAGAGCTTTCCTATCTTCTGCAACTGCTTAG 1215 0.456 MWLRWTLMELDLTGFEKATMCKLCXENTAHQQYLGIDFWLAPQIAVVKVNVDGMYHQHMGRAGCGFVFRDHEGALLEMYSFDFEEMCPSGKDLVPPFPLVFVLDSNCANSPIGATEAVQRIAPKFGFGPTAKPILEDPWSQHLSEALSHEIMKRKGSLYINILGFIVGAIAELESNASERDFAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKYKSENRIVPDGVNAKLLGCHGPLANRQPGRAFLSSATA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1334 404 CDD Ribosomal_L16_L10e 224 349 IPR016180 GO:0003735|GO:0005840|GO:0006412
Dere04g1334 404 ProSitePatterns Ribosomal protein L10e signature. 291 312 IPR018255 GO:0003735|GO:0005840|GO:0006412
Dere04g1334 404 Gene3D Ribosomal protein L10e/L16 184 400 IPR036920 GO:0003735|GO:0005840|GO:0006412
Dere04g1334 404 SUPERFAMILY Ribosomal protein L16p/L10e 187 356 IPR036920 GO:0003735|GO:0005840|GO:0006412
Dere04g1334 404 NCBIfam 50S ribosomal protein L16 184 357 IPR001197 GO:0003735|GO:0005840|GO:0006412
Dere04g1334 404 Pfam Ribosomal protein L16p/L10e 195 349 IPR016180 GO:0003735|GO:0005840|GO:0006412
Dere04g1334 404 PANTHER 60S RIBOSOMAL PROTEIN L10 184 396 IPR001197 GO:0003735|GO:0005840|GO:0006412
Dere04g1334 404 FunFam 60S ribosomal protein L10 184 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1334 Dere-ChrDere04 15033441 15038399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1334 184 403 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.273 9.47e-143 403
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0769 05 13219311 13220761 Dere04g1334 04 15033441 15038399 CCT