Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1331 ATGGAAACATCGGGTGCTAATTCTGAACAATACGCCATTTCTTCTCCTTCATCACCATCTAACATTCGTGTAAATAATAGTAACAGCAATAACAGTGCCAGTACTGAAGCTTGGTATGGGATGAGGTTACCCCCTGTCAGCCCCTTCCGTTCTCCACTTTCCTTTCTGTTGAATTACGCGGTCCGCTCAAGTTCGTCAAATCACGATTCAGACGCTGTGACAGTCAACAACGGGGTTACCTCTTCGGAAATACGCTCTCAGCTTTCTGATTCTGGCGCTGCGTGCAGTGGCAGCAGCAGTGGCAGTACTGGGGAAGTTTCAATAAGGATCATTGGAGCTGGAGAACAAGAACACAATGTTGTGTTAAATTCTTTCTCTTCTCCCTCTCAGGATCAGCTTGGAGAAGTCGATCATGATGATTTGATGGGAAATAGAGGAGGAATTCCCACATTGGATAACGATGCTGAGGGTCACAGTGGAAGGGTCCCTCTAGTGTCTGCATCTACATCAGCCGCTAGTGGACAGGTGGATGAAGATGCTGGGAATGGCTTAGAAAGTAACAATGGGGATTCATCTTCTTACCAGAGGTATGATATTCAGCAGGCTGCTAAATGGATTGAGCAGATTCTTCCTTTCTCATTGTTGCTGTTGGTTGTTTTCATTCGGCAGCATTTGCAAGGTTTCATTGTCACAATTTGGATATCAGCTGTGATGTTCAAATCAAATGAAATTGTTAAGAAGCAGACAGCGCTGAAGGGAGATAGGAAAGTCTTTATTCTTGTTGGTATCTCTTTTGTCTTCATTCTTCACGTGATGTGCATTTACTGGTGGTATCGAAATGATGATCTTTTGTACCCACTGGTCATGCTTCCTCCAAAATCAGCTCCTCCTTTCTGGCATGCTATATTCATCATTTTGGTTAATGATACACTGGTGCGGCAAGTAGCAATGGCTTTCAAGTGTTTGCTGCTGATATATTACAGAAGTGGAAGAGGCCATAACTTCCGTCGGCAGGGTCAAATGTTAACACTGGTTGAGTACTCGCTGCTGTTGTATCGTGCTTTGTTGCCAACACCAGTTTGGTACCGGTTTTTCTTAAACAAGGATTATGGAAGTCTCTTTTCATCACTGACTACAGGATTGTATTTAACTTTCAAGCTGACATCTGTTATTGAGAAGGTCCAGTCCTTCTTTTCTGCCTTAAAAGCATTATCAAGAAAGGAAGTTCATTATGGAATTTATGCCACAATGGAACAGGTAAATGCTGCTGGCGACCTATGTGCTATATGCCAAGAGAAGGTGCATGTTCCAGTTTTGTTGCGCTGCAAACACATTTTCTGCGAGGAGTGCGTGTCAGAATGGTTTGAGAGAGAAAGGACTTGCCCACTGTGCAGAGCATTGGTAAAACCTGCGGACCTGCGGACCTTTGGAGATGGATCGACAAGTCTTATTTTCCAGCTGTTTTAA 1467 0.4376 METSGANSEQYAISSPSSPSNIRVNNSNSNNSASTEAWYGMRLPPVSPFRSPLSFLLNYAVRSSSSNHDSDAVTVNNGVTSSEIRSQLSDSGAACSGSSSGSTGEVSIRIIGAGEQEHNVVLNSFSSPSQDQLGEVDHDDLMGNRGGIPTLDNDAEGHSGRVPLVSASTSAASGQVDEDAGNGLESNNGDSSSYQRYDIQQAAKWIEQILPFSLLLLVVFIRQHLQGFIVTIWISAVMFKSNEIVKKQTALKGDRKVFILVGISFVFILHVMCIYWWYRNDDLLYPLVMLPPKSAPPFWHAIFIILVNDTLVRQVAMAFKCLLLIYYRSGRGHNFRRQGQMLTLVEYSLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVIEKVQSFFSALKALSRKEVHYGIYATMEQVNAAGDLCAICQEKVHVPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLIFQLF 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1331 488 Pfam Zinc finger, C3HC4 type (RING finger) 425 468 - -
Dere04g1331 488 MobiDBLite consensus disorder prediction 1 31 - -
Dere04g1331 488 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 27 488 IPR044235 GO:0061630|GO:1904294
Dere04g1331 488 CDD RING-HC_RNFT1-like 425 465 - -
Dere04g1331 488 MobiDBLite consensus disorder prediction 163 192 - -
Dere04g1331 488 SUPERFAMILY RING/U-box 417 470 - -
Dere04g1331 488 MobiDBLite consensus disorder prediction 125 192 - -
Dere04g1331 488 ProSitePatterns Zinc finger RING-type signature. 442 451 IPR017907 -
Dere04g1331 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 475 IPR013083 -
Dere04g1331 488 SMART ring_2 427 464 IPR001841 -
Dere04g1331 488 ProSiteProfiles Zinc finger RING-type profile. 427 465 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1331 Dere-ChrDere04 15001225 15006938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1331 96 488 C3H Transcription Factor Family AT5G01960 68.608 0.0 561