Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1323 ATGGAGACTCTGAAAGCTGCAATTCCCGAGAGCCTGAAGCGAATGATTGCAGAGAGCACTACCGATGATCTTCCAACGACATGTTCTTCTCTTCACTACTTCTTTCTTCATTTCGAGCCCTTTCACCAAATGGTGAGTGACTTAGCGGACCCAAAAAATGCTCTATGTGGTAAGAGTGAGGCCGCTGCTTTGGAATCCAAGCAGCTTGGAAATCAATGCTTCTTGAAAGGAAACTATATGAAGGCTTTGAATTTCTATACGCAGGCATTGCGTGTGGCTCCCTTGGAGGCTTGTGACCTGGAGAAGAATCTGGTTGCAACATTATATATTAATCGAGCTACTGCATTGCATAAAATAAACCTTTCAATAGAGTGTTTGCGAGACTGCACTCGGGCTCTTCAGATATGTCCAAGCTATGCAAAGGCATGGTACAGGAGAGGTAAGGTGAATACTTCACTGGGAAACTATAAAGATGCAATCTGTGATCTAAATGTAGCGAAGAGCATGGAATCGTCTTTGGGTGGGAAGAACCAAATAGAAAGTGAACTAAAAAATATTTCAGACCAATGCAAGAGGACAAGTTCAGTAGTTCAGCATGAGAAGAATAGCTTGGATATAGCAGGTGAGATGCCCCAATTAAAGCTACAGTTGGTCACCATGCCTGATAAAGGACGGGGTATGGTATCTTCATGTGACATTTCACCCGCTTCTTTAGTTCATCGTGAAGAACCTTATGCTGTGATAATATTGAAGCAATGCCGGGAAACTCATTGCCACTACTGCTTGAATGACCTACCTGCTGATACTGTTCCTTGTAGATCATGTTCAATACCACTATATTGCTCCCAACAATGCCAAATAAAGGCAGGTGGACAAATGTTCAAGATTTACCCAGAAGACAATGGCATTCTTAAAAATCTCCCCAGTGATCTTGAAAAGTATGTTGCAGATACTATATTAGGCAATGATTTTGATCATGAGATTGAGGATATTCCTGAACATAAACATGAATGTCAAGGTGTACATTGGTCTGCAGTATTACCATCTGAGATAGTTTTGGCTGGTCGAGTACTAGCAAAATTTTTGCAGAAAAGTGCATGCAATGATATTACAAATTTTGTGAAAAGCCTGGAACTCTCTCATTGTTATACACAAATGCCATCAGATAGCAAATTGGATTTACATATATATGCTGTTATATTGCTTTACTGTCTTCAACACTCTTGCGGTGCTGTGTTTTCCATGGATGGAGTCTCTATGTCACAGGTTGTCATAATTCTTTCTCAAATTAAAGTGAATTGCATGACTGTTGTTCATATGAGATCAATAGATGCTAATGGGCTACAAGATCAGTTTGGAGAATCTCCAACCAGCGCATGTTTAACGAGTAATGTGGAACAGGTCAGAGTGGGTAAGGCTATTTACAAAGATGGCAGTTTGTTCAACCATTCTTGCCAACCAAACATTCATGCATATTTCCTTTCACGTACTCTGTGTATACGAACAACAAAAGTTGTAGCAGCTGGGAGTCAGCTGGAATTATCCTATGGTCCACAGGTTGGGCTGTGGGATTGTAAAGATCGCCATACCTTTCTGGAAGATGAATATGCATTCCAATGTCAGTGTAGCGCTTGTTCAGAATTCAATCTATCTGACATTGTGCTCAGTGCGTTTCACTGTGTCAATCTAAATTGTTCTGGCGCAGTATTGGAAAGCAGAGTAGTTGACTGGGAAAAGAAGAAAATAAAGCACTTCCCCGGTGCCAACAAAGTTGACATGGCTGATGATGACATTTATAAAGTTTGTCTTCGTTTATTTAACCAAAATGATGTCTCCATTCATATTTTACCTGGCTACTGTTTGCAATGTGATACTTACCGTGATTTAGAATCTTCATGCACTGCAATTGATAAAGCTTGGACATGCATCAAAAGATTGCAGGATGCAATAATATCAAAAGAAATTTCAAATACTACTATTTCAGATGCATTAAAATCCCTTAGTTTGCTGAGGTCAAATTTGCATGCATACAACAAGCGTATTGCAGAGGCAGAGGACAGCCTTGCTCAGGCCTTTTGCATGGCGGGAGAACTACAATTAGCAATGGATCATTGTAAAGCATCTTTGCTGATTCTGGAAAAGCTATATGATCCTGATGATATTGTCATTGCTTTTGAGCTTGTGAAGCTTTGTTCCATTCAAATTTCCATGGGTGATAAAACTGCTCTGGAAAGCATAGGTCGAATATGTGACATCTTCTCGCGTTATTATGGACTTCATGCATGCTTGGTATTCCCATATCTTCAGTATCTTAGAAAGAAGCTGAGAATGTTTTAA 2337 0.3997 METLKAAIPESLKRMIAESTTDDLPTTCSSLHYFFLHFEPFHQMVSDLADPKNALCGKSEAAALESKQLGNQCFLKGNYMKALNFYTQALRVAPLEACDLEKNLVATLYINRATALHKINLSIECLRDCTRALQICPSYAKAWYRRGKVNTSLGNYKDAICDLNVAKSMESSLGGKNQIESELKNISDQCKRTSSVVQHEKNSLDIAGEMPQLKLQLVTMPDKGRGMVSSCDISPASLVHREEPYAVIILKQCRETHCHYCLNDLPADTVPCRSCSIPLYCSQQCQIKAGGQMFKIYPEDNGILKNLPSDLEKYVADTILGNDFDHEIEDIPEHKHECQGVHWSAVLPSEIVLAGRVLAKFLQKSACNDITNFVKSLELSHCYTQMPSDSKLDLHIYAVILLYCLQHSCGAVFSMDGVSMSQVVIILSQIKVNCMTVVHMRSIDANGLQDQFGESPTSACLTSNVEQVRVGKAIYKDGSLFNHSCQPNIHAYFLSRTLCIRTTKVVAAGSQLELSYGPQVGLWDCKDRHTFLEDEYAFQCQCSACSEFNLSDIVLSAFHCVNLNCSGAVLESRVVDWEKKKIKHFPGANKVDMADDDIYKVCLRLFNQNDVSIHILPGYCLQCDTYRDLESSCTAIDKAWTCIKRLQDAIISKEISNTTISDALKSLSLLRSNLHAYNKRIAEAEDSLAQAFCMAGELQLAMDHCKASLLILEKLYDPDDIVIAFELVKLCSIQISMGDKTALESIGRICDIFSRYYGLHACLVFPYLQYLRKKLRMF 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1323 778 SMART tpr_5 106 139 IPR019734 GO:0005515
Dere04g1323 778 SMART tpr_5 140 173 IPR019734 GO:0005515
Dere04g1323 778 SMART tpr_5 682 715 IPR019734 GO:0005515
Dere04g1323 778 SMART tpr_5 63 96 IPR019734 GO:0005515
Dere04g1323 778 SUPERFAMILY TPR-like 64 712 IPR011990 GO:0005515
Dere04g1323 778 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Dere04g1323 778 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 775 - -
Dere04g1323 778 Gene3D SET domain 432 516 IPR046341 -
Dere04g1323 778 ProSiteProfiles SET domain profile. 213 517 IPR001214 GO:0005515
Dere04g1323 778 Coils Coil 667 687 - -
Dere04g1323 778 SUPERFAMILY SET domain 215 543 IPR046341 -
Dere04g1323 778 Gene3D Tetratricopeptide repeat domain 522 775 IPR011990 GO:0005515
Dere04g1323 778 Gene3D Tetratricopeptide repeat domain 38 203 IPR011990 GO:0005515
Dere04g1323 778 Pfam SET domain 224 517 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere04g1323 SET 2.2e-07 No_clan