Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1301 ATGCTACCAAAGTATCTAAGATTCTATCCAGTCCAGCTCGATTGGACCTTGAGAGGGCCGGAACCCTCGACTCTGGTGGTGCCATTATCGCTTGGTGCCATAGGGGTTTTGCAGGAGAAGGCGCGTGATACTTCACTTCCCTCACCCATAAGAAGCTTTACTGTTGGCTTAACAAAACACAGTTTTCTGCTGGCACAAACAGAAATGTCCATTCTGGCATTTGGTTATTCTAAGTTGAGCCCCTCGTTAACTCTTCAGTTACCTTGTAACTGCATGAGAAGAGTGGGTTTGATTACAAAATCTAAGTATTCTGTTGCTGATAGAACATTGACTTCTAGTTCTGTGAGTTCACCCACATCCAAAGCAGACTCTCCTCGCTTGAATAGGAAACAAGGACGTTCATCTTCATTATATAGTCGTCCTAGTTTATCAGAAATGAAAAAAGAGAGGATGGCAAACCGTGAGAAGGTTTATGAATTCTTGCGTGGGATTGGCATTGTTCCTGATGAACTTGATGGTCTGGAACTTCCAGTAACGGTTGAAGTTATGAGGGAGCGAGTAGATTTTCTTCACAATTTAGGGCTTACAATTGAAGACATTAATAATTATCCATTAGTTCTTGGCTGTAGTGTCAAAAAGAATATGATTCCCGTACTTGATTACCTTGGTAAATTGGGAGTCAGGAAATCTACATTCACACAATTCTTGCAGAGATACCCTCAAGTTCTTCATGCTAGTGTTGTTGTTGACCTTGAGCCAGTGGTCAAGTATCTCCAAGGGATGGATATCAAACCCAATGACATTCCCCGGGTCCTTGAGACATATCCAGAAGTGCTAGGATTCAAGCTTGAGGGAACCATGAGCACATCGGTTGCTTTTTTGGTTGGCATTGGTGTTGGAAGAAGAGAAATTGGAGGGCTTTTAACTAGATTCCCTGAGATTTTGGGAATGAGAGTTGGTAGAGTAATTAAGCCTTTTGTGGAGTATCTAGAAAGCCTGGGAATTCCAAGATTAGCCATTGCAAGAATAATAGAGAAACGACCTTATATTCTTGGCTTTGCATTGGATGAGAAGGTGAAGCCAAATGTTGAAACCCTCGAGGAGTTTAATATTAGAAGAGCTTTACTGCCCTTGGTAATTGCTCAGTATCCTGATATCATTGGAATGGACTTAAAGCCAAAGCTTGACAATCAAAGAAACTTGCTTAAATCTTTACTGGATATGGATCCTGAGGATTTTGGTAGAGTTGTTGAGAAGATGCCGCAGGTAATTAGCCTCAGCAATGCACCTATGTTGAAGCATGTTAATTTTCTCAAGGATTGTGGGTTTTCCTTGCAACAAATGAGGAAGATGGTTGTTGGATGCCCCCAACTAATTGCTTTAAACATTGACATCATGAAGCTTAGCTTTAATTACTTAAAAAAAGAGATGCAGAGGCCTCTGGAAGACTTGGTTGCTTTCCCAGCCTTCTTCACATATAGTCTGGAGTCAACTGTAAAACCTAGGCATAAGATGGTTGCCAAGAAGGGATTGAAGTGTTCTCTTGCATGGATGCTTAATTGCTCAGATGACAAGTTTGAGCAACGAATGGACTATGACACTATTGACATGGAGGAAATGGAAATGGAACCATCTTTTGACATGAATTCACTGATGGAACCAAGGAGTGATGGCTCAGCTTCTGATTATGAGGACAGTGATGACGATGATGAATAG 1716 0.4138 MLPKYLRFYPVQLDWTLRGPEPSTLVVPLSLGAIGVLQEKARDTSLPSPIRSFTVGLTKHSFLLAQTEMSILAFGYSKLSPSLTLQLPCNCMRRVGLITKSKYSVADRTLTSSSVSSPTSKADSPRLNRKQGRSSSLYSRPSLSEMKKERMANREKVYEFLRGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTQFLQRYPQVLHASVVVDLEPVVKYLQGMDIKPNDIPRVLETYPEVLGFKLEGTMSTSVAFLVGIGVGRREIGGLLTRFPEILGMRVGRVIKPFVEYLESLGIPRLAIARIIEKRPYILGFALDEKVKPNVETLEEFNIRRALLPLVIAQYPDIIGMDLKPKLDNQRNLLKSLLDMDPEDFGRVVEKMPQVISLSNAPMLKHVNFLKDCGFSLQQMRKMVVGCPQLIALNIDIMKLSFNYLKKEMQRPLEDLVAFPAFFTYSLESTVKPRHKMVAKKGLKCSLAWMLNCSDDKFEQRMDYDTIDMEEMEMEPSFDMNSLMEPRSDGSASDYEDSDDDDE 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1301 571 SMART mt_12 449 480 IPR003690 GO:0003690|GO:0006355
Dere04g1301 571 SMART mt_12 233 264 IPR003690 GO:0003690|GO:0006355
Dere04g1301 571 SMART mt_12 377 409 IPR003690 GO:0003690|GO:0006355
Dere04g1301 571 SMART mt_12 134 167 IPR003690 GO:0003690|GO:0006355
Dere04g1301 571 SMART mt_12 197 228 IPR003690 GO:0003690|GO:0006355
Dere04g1301 571 SMART mt_12 481 512 IPR003690 GO:0003690|GO:0006355
Dere04g1301 571 SMART mt_12 414 444 IPR003690 GO:0003690|GO:0006355
Dere04g1301 571 SMART mt_12 305 336 IPR003690 GO:0003690|GO:0006355
Dere04g1301 571 SMART mt_12 341 372 IPR003690 GO:0003690|GO:0006355
Dere04g1301 571 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Dere04g1301 571 Pfam mTERF 219 527 IPR003690 GO:0003690|GO:0006355
Dere04g1301 571 Gene3D Transcription termination factor 3, mitochondrial 318 536 IPR038538 -
Dere04g1301 571 MobiDBLite consensus disorder prediction 543 571 - -
Dere04g1301 571 FunFam Transcription termination factor MTERF4, chloroplastic 321 535 - -
Dere04g1301 571 FunFam Transcription termination factor mterf4, chloroplastic 183 320 - -
Dere04g1301 571 PANTHER CGI-12 PROTEIN-RELATED 340 529 IPR003690 GO:0003690|GO:0006355
Dere04g1301 571 MobiDBLite consensus disorder prediction 109 148 - -
Dere04g1301 571 MobiDBLite consensus disorder prediction 109 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1301 Dere-ChrDere04 14783892 14787779 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Dere04g1301 mTERF 6.2e-109 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1301 04 14783892 14787779 Dere04g1301 04 14783892 14787779 ECH