Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1300 ATGGGTGCGGTAGTCGAGTGTAATCCGCCGCGCGCGGATGAGGTGGCCTTTTTACCGCTGAATTCGCTTCCTCTTGGGTTCAGGTTTCGGCCCACGGATGAGGAGCTGATCGATTACTATTTGCGACAGAAGATCAACGGAAATGGGGATGACGTTTGGGTTATTCGAGAAATTGATGTTTGCAAATGGGAGCCGTGGGATTTGCCCGATTTATCGGTTATAAGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGATCGCAAATATCCAAATGGGCATCGATTGAACCGAGCAACAACTCATGGTTACTGGAAGGCAACGGGCAAAGATCGCAAAATTAAGTCTGGGTCGATCTTGATTGGAATGAAGAAGACTTTAGTGTTCTATACTGGTCGAGCACCCAGAGGGAAGAGGACCTATTGGGTTATGCATGAATACCGTCCTACCCTAAAGGAGCTTGATGGTACCAATCCTGGACAGAGTGCATATGTCCTTTGTCGTTTATTTAAGAAGCAAGATGAGACTCTGGAAGGTTCAAACTGTGAAGAAGTGGAGCGGACTGTGGCAACTCCAACTACTGCTAATTACTCTCCAGAAGAAATACAGTCTGAACTAGCTCCAATTACAGCTTCTCCATCACTAGCTACAGAAGTTGATAAGAACACGGCAGCTCCAATCTGTATCTCTGAGTATTCTGAGGAGGACATATCCAACATTATAACACCGGTTGACTATAACAGTGAAGAATGTGATACCAGTGATGTACAGAATAAGATTGTAATTCCAACAACCGCAGAGGAAGATCAGCTTCTGAATTTTGACATATTTTATGATCCACCAATGGAACCATTGGATGACAAACTATTCTCCCCCGTACATGTGCATATCCCTCCGGAATTTTATTTTCCTGCAAGCAATGAATCAGATAATTGTTGTGGGCTGCACCTTCAGTATGGTACAAATGAGGCAAATATGTCAGACTTTTTAAACTCAGTTGTCAATTGGGATGAGTTATCATATGATTCCAGCAGTCAAAAGCCCACCTCCACCTTGATTGATGCTAAGGATAATGGATCAGGCAGTGATTCAGATGTGGAAATGTCCAATGTGCCGAGTCTGCAACCATTACATGCTTCGAATTCTAAGGAGGCACTTGACAGAAGGGCTCCTTTGAAGTTTGAGACAACTTTAGAATCTTATGGCACCATCACGTCTGACCTTGGTGGTGATGAGCAGAAGAGCAATATGGGATTATTACAAAACAATTATCTGTTGACTTCCTCAACTGATGTTGGCATGGGCCAAGTGTACAATGTGGTCAATGGTTATGAGGAATCCAGAAACTATAATTCAGTTGTTAGTGGCGATAATGGTACTGGAATCAGGATAAGGACTCGCCAAGTATGGAATGACCTGTCAAACCTGAACCCCGCAATGCAAGGTACTGCACCCAGAAGAATACGTCTGCAACGTAACCTTCAAGTGCACCCACTTAGCTCCAATGAGGTGGGTAAGGATGGGAGTTGTGCACCAGAAGACATTGATTCAAAGCCAAGCATTGAAGGGGAGACGAAAACATCAGAAAATCATACTACTGATGTGGATGCCACTGATGTAGATGAGCCCCAGAAGAAATCTTCGGAGTCAACTGACGTTACTAAGATTTCTCAGCCACATGCTGCAAGTGCCTACTCCATCTTGAAGTTGAAAGACTTTTTGTTGTGCCAGAGGGTGCGTCACACATCAAGAGCTTCCTTCAAACGCACAATGTGGTCATTTGTTGTATTTTCTGTTGTTGTACTTGTCCTGTTAGTATTCTTAGCTAACATATGGGGATATCTTAAATTTTGA 1857 0.4378 MGAVVECNPPRADEVAFLPLNSLPLGFRFRPTDEELIDYYLRQKINGNGDDVWVIREIDVCKWEPWDLPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRKIKSGSILIGMKKTLVFYTGRAPRGKRTYWVMHEYRPTLKELDGTNPGQSAYVLCRLFKKQDETLEGSNCEEVERTVATPTTANYSPEEIQSELAPITASPSLATEVDKNTAAPICISEYSEEDISNIITPVDYNSEECDTSDVQNKIVIPTTAEEDQLLNFDIFYDPPMEPLDDKLFSPVHVHIPPEFYFPASNESDNCCGLHLQYGTNEANMSDFLNSVVNWDELSYDSSSQKPTSTLIDAKDNGSGSDSDVEMSNVPSLQPLHASNSKEALDRRAPLKFETTLESYGTITSDLGGDEQKSNMGLLQNNYLLTSSTDVGMGQVYNVVNGYEESRNYNSVVSGDNGTGIRIRTRQVWNDLSNLNPAMQGTAPRRIRLQRNLQVHPLSSNEVGKDGSCAPEDIDSKPSIEGETKTSENHTTDVDATDVDEPQKKSSESTDVTKISQPHAASAYSILKLKDFLLCQRVRHTSRASFKRTMWSFVVFSVVVLVLLVFLANIWGYLKF 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1300 618 MobiDBLite consensus disorder prediction 345 381 - -
Dere04g1300 618 ProSiteProfiles NAC domain profile. 23 173 IPR003441 GO:0003677|GO:0006355
Dere04g1300 618 MobiDBLite consensus disorder prediction 498 556 - -
Dere04g1300 618 MobiDBLite consensus disorder prediction 345 387 - -
Dere04g1300 618 Pfam No apical meristem (NAM) protein 24 149 IPR003441 GO:0003677|GO:0006355
Dere04g1300 618 Gene3D NAC domain 32 178 IPR036093 GO:0003677|GO:0006355
Dere04g1300 618 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 258 - -
Dere04g1300 618 FunFam Nac domain-containing protein 86 32 176 - -
Dere04g1300 618 SUPERFAMILY NAC domain 17 173 IPR036093 GO:0003677|GO:0006355
Dere04g1300 618 MobiDBLite consensus disorder prediction 510 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1300 Dere-ChrDere04 14769060 14772432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1300 9 504 NAC Transcription Factor Family AT1G33060 40.417 1.08e-98 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere04g1300 NAM 3.9e-35 No_clan