Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1290 ATGGGTAATTCTACTCAAGAATCCCATCTCAGATCCGAAAACTCTGTAACCTATGAGTCCCCCTATCCTCTCTACGCCATGGCCTTCTCTTCCACCCCTTCTCTTGCCTCTCCCCACCAACGTATCGCAGTTGGCAGCTTCGTCGAAGACTATACCAACCGCGTCGATATCCTCTCCTTCAACGCTGACTCTCTCTCCATTAGACCCCAACCTTCGCTCTCTTTCGACCACCCATACCCGCCTACCAAACTTATGTTCCACCCAAACGCCCACTCCTCTCTCCGGAAATCCTCGTCCGACCTCCTCGCCACATCCGGTGACTATCTTCGCCTCTGGGAGGTTCGGGAGAATTCCGTCGACACAATTTCACTTCTTAACAACAGCAAGACCAGCGAGTTCTGTGCCCCATTGACCTCTTTCGATTGGAACGACATTGAACCCAAGAGAATTGGGACTTCCAGCATCGACACTACTTGTACGATTTGGGATATCGAAAAGGGGGTTGTTGAAACGCAGCTAATTGCGCACGATAAGGAGGTTTACGATATTGCTTGGGGTGAGGCTAGAGTGTTCGCGTCTGTTTCGGCGGATGGGTCTGTTAGAATCTTCGATCTGAGGGACAAGGAGCACTCCACGATTATATACGAGAGTCCGCAACCAGATACGCCTTTGCTTAGGTTGGCTTGGAATAAGCAGGACCTGAGGTACATGGCCACTATATTGATGGATAGCAATAAGATTGTGATATTGGATATTAGGTCACCGACCATGCCGGTAGCGGAGTTGGAGAGGCATCGTGCTAGCGTGAATGCCATAGCTTGGGCTCCCCAGAGTTATCGGCATATTTGTTCGGCGGGGGATGATTCGCAGGCACTTATTTGGGAATTGCCCACTGTGGCTGGACCTAATGGAATTGATCCCATGTCCATGTATTCTGCTGGTTCTGAAATTAATCAACTGCAGTGGTCTGCTGCCCAGCCTGACTGGATTGCCATTGCTTTTGCTAATAAGATGCAGCTTTTGAAGGTTTGA 1032 0.499 MGNSTQESHLRSENSVTYESPYPLYAMAFSSTPSLASPHQRIAVGSFVEDYTNRVDILSFNADSLSIRPQPSLSFDHPYPPTKLMFHPNAHSSLRKSSSDLLATSGDYLRLWEVRENSVDTISLLNNSKTSEFCAPLTSFDWNDIEPKRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKIVILDIRSPTMPVAELERHRASVNAIAWAPQSYRHICSAGDDSQALIWELPTVAGPNGIDPMSMYSAGSEINQLQWSAAQPDWIAIAFANKMQLLKV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1290 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 213 IPR001680 GO:0005515
Dere04g1290 343 Pfam WD domain, G-beta repeat 173 204 IPR001680 GO:0005515
Dere04g1290 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 296 IPR001680 GO:0005515
Dere04g1290 343 PANTHER WD REPEAT CONTAINING PROTEIN 5 343 IPR045159 -
Dere04g1290 343 Gene3D - 134 342 IPR015943 GO:0005515
Dere04g1290 343 SUPERFAMILY WD40 repeat-like 24 299 IPR036322 GO:0005515
Dere04g1290 343 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Dere04g1290 343 FunFam WD repeat-containing protein LWD1 11 342 - -
Dere04g1290 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 296 - -
Dere04g1290 343 SMART WD40_4 121 163 IPR001680 GO:0005515
Dere04g1290 343 SMART WD40_4 166 204 IPR001680 GO:0005515
Dere04g1290 343 SMART WD40_4 255 295 IPR001680 GO:0005515
Dere04g1290 343 SMART WD40_4 68 113 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1290 Dere-ChrDere04 14660978 14662009 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2347 05 33791099 33792271 Dere04g1290 04 14660978 14662009 CCT
Dere04g1290 04 14660978 14662009 Dere04g1290 04 14660978 14662009 ECH