Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1282 ATGGCTGCCAGCGAGTTGGCTTGCACCTACGCCGCTTTAATACTCCACGATGACGGAATACCAATCACCGCGGAGAAGCTTAGTACTTTGGTGAAATCGGCTGATGCGACTGTGGAATCGTACTGGCCTAGCCTTTTTGCGAAGCTTGCTGACAAGCGGAATATTGAGGATCTAATTTTGAATGCTGGTTCAGGCGGCGCTCCTGCCGTAGCAGTGGCTGCTCCCGCTGCCGGAGCCGGTGCTGCAGCAGCGCCTGCTGCGGAGGAAAATAAGGAAGAACCAAAGGAAGAGAGTGATGATGACATGGGGTTCAGCTTGTTGGCATTCTCCTTCGATGTGGACAAACTAAAAGAAGAATGGAAGAGGGCTGGTCCAAGGCCTCGACCTCTTCCTCCACCTCCAGATAGACCTATTTACCAACATGAAAAAGAAGGCTGGTTCCTTTGGGATGCGCTCGATTACATTGTTTCTTTGGAAGCAGATGCATTCTTTCCAGGATTTAACAATGATGGTAGTGGATGGCCAGATTTTTCAAGTCTTGTCATGGGACATAGACTGTATGAGACTTCTTCCTCTAGAGCATACCGACCAGACAGGAAAACTTCGGCGGAACTTTCCAATATCACCCGTGACAATATGTACCATCCGAAACATAATTGGACAGTTCGAGTGCAGGAACATCTTTACAAGAGCTCGGGTGAAGAAGGCCTCATAAGTCTCTCCTGTCAAAACCAGCAATATTTCTTTCACATCCACTTCCATAATGTTCTTGTGTCAAAAGTAAGGATGGCCGCTTTCTATTTGGAGATGAAGATGAGTGCCCCAAGTGGACGAAGCATGCTAATGAAGCAGGAGGTTGAAGAATCTGGTCACTGGTACCAGCTTTCTACGATAATCTATGCATTCATTGGGGTCGAGACAGATGCTATCCCTTCTGATTCGCAACTTTCCAAGCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAGCTTGTGGAGCACAGCTCACCAGGGGGATTGCTCTCTTGGTTTGCTTCATGGTTTTGGTTTCTTTTACTTTTGTACAAATTGTGTCACTTCATCTATCAGATATGAGTGGCCGCTTTTCTCGCACAATCTATGTCGGCAACTTGCCCTTGGATATCAGGGAATCAGAAATTGAAGATCTATTCTACAAGTATGGCCGCATATTGGATATTGAGTTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCTAGAGATGCAGAAGATGCAATCCGGGGTCGTGATGGATACAACTTTGATGGTTGTCGGTTAAGGGTTGAGCTTGCTCATGGTGGTAGGGGATTGTCATCAAGCGATCGTCGTGGCTATGGTGGTAGTGGTGGTGGCCGTTTTGGCATCTCACGCCATTCTGAATACCGGGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGGAAAGCTGGTGACGTGTGTTTTGCTGATGTCACTCGTGATAGTGAAGGAACTTTTGGCATTGTTGACTACACTAATTATGATGACATGAAATATGCTATTCGGAAACTTGATGACACCGAGTTTAAGAATCCCTGGGCAAGAGCTTATATTCGGGTGAGGAAGTATGAGAACAGTCCCTCAAGGAGTCACAGTAGAAGCCCAGGCAGAAGCAGAAGTCCTAAAAGGATTAGAAGTAGGTCATTGGAGCGATCTGTCTCTAGGTCACCTTCTAGATCTAGATCAGCATCACCAATAAAGTCTTCCAGGCCAAGGTCAAGATCACGATCTGGATCTCCACGCTAG 1824 0.466 MAASELACTYAALILHDDGIPITAEKLSTLVKSADATVESYWPSLFAKLADKRNIEDLILNAGSGGAPAVAVAAPAAGAGAAAAPAAEENKEEPKEESDDDMGFSLLAFSFDVDKLKEEWKRAGPRPRPLPPPPDRPIYQHEKEGWFLWDALDYIVSLEADAFFPGFNNDGSGWPDFSSLVMGHRLYETSSSRAYRPDRKTSAELSNITRDNMYHPKHNWTVRVQEHLYKSSGEEGLISLSCQNQQYFFHIHFHNVLVSKVRMAAFYLEMKMSAPSGRSMLMKQEVEESGHWYQLSTIIYAFIGVETDAIPSDSQLSKLWSILEQMSNGACGAQLTRGIALLVCFMVLVSFTFVQIVSLHLSDMSGRFSRTIYVGNLPLDIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGLSSSDRRGYGGSGGGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFADVTRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFKNPWARAYIRVRKYENSPSRSHSRSPGRSRSPKRIRSRSLERSVSRSPSRSRSASPIKSSRPRSRSRSGSPR 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1282 607 MobiDBLite consensus disorder prediction 550 607 - -
Dere04g1282 607 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 370 445 IPR000504 GO:0003723
Dere04g1282 607 SMART rrm1_1 371 441 IPR000504 GO:0003723
Dere04g1282 607 SMART rrm1_1 474 543 IPR000504 GO:0003723
Dere04g1282 607 Gene3D - 473 550 IPR012677 -
Dere04g1282 607 SUPERFAMILY RNA-binding domain, RBD 369 544 IPR035979 GO:0003676
Dere04g1282 607 CDD Ribosomal_P1 5 64 - -
Dere04g1282 607 FunFam 60S acidic ribosomal protein P1 1 63 - -
Dere04g1282 607 Gene3D - 2 63 IPR038716 -
Dere04g1282 607 FunFam serine/arginine-rich splicing factor SR34A-like 473 550 - -
Dere04g1282 607 Pfam 60s Acidic ribosomal protein 22 106 - -
Dere04g1282 607 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 473 551 IPR000504 GO:0003723
Dere04g1282 607 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Dere04g1282 607 CDD RRM2_SF2_plant_like 473 548 - -
Dere04g1282 607 Gene3D - 362 472 IPR012677 -
Dere04g1282 607 MobiDBLite consensus disorder prediction 581 607 - -
Dere04g1282 607 FunFam serine/arginine-rich splicing factor SR34A-like 365 472 - -
Dere04g1282 607 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 475 537 IPR000504 GO:0003723
Dere04g1282 607 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 439 IPR000504 GO:0003723
Dere04g1282 607 CDD RRM1_SF2_plant_like 371 442 - -
Dere04g1282 607 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 83 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1282 Dere-ChrDere04 14595223 14606362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1282 1 107 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 58.182 2.41e-35 127