Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1280 ATGGCGGTTGCTGAGAATGCTGGAGCCATAATCGGCTCCTCCAGTCAAAACTTGGACAACAGTGTAGTCTCGTCGGACTCGACAGTGACAAATGAGCTGGAGAAATCGAAGGCCAGAACGGGTTCCATTGGAAATGGTATGGAAACAAATGTTCAGCCTATCAACGGCGATCAGAATCTGAACGGTGTATTCAACCACCAGGATAGAGTTCCGACGACTGTATCGACCCCTAACGGTAATTACAAGCCTCAAATGCCTCAGATGCGAAATGGGTTTGAGGCAAATGGGGTCCAGAACCAACAGATGGTGGTGAACGATGGAGGATACGGAATTAAGCAGATGTCCAACGGAGTAAGAAATGGAGAAGATGGTGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAGGAACTGTTGTCCAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCCGTCTCTTACCAATAATCAGGGGTTCTTAGGCGGTGGTGGGTTTGGCTACACTAACAACTTTCTACTCCACGCTAATTATGGCAATGCTAATGGACTTACTAACAGAAGGAGGAAGAATGGCTATAATCAAGGGAAGCGAAGAGCGAATAATAAAATGGATATGGAGAAGAGAGAAGAGATGACTAGGAAGACTGTTTATGTGTCTGACATCGATCAACAGGTCACCGAAGAGCAGCTGGCAGCTCTTTTTCTTAACTGCGGCCAGGTTGTTGATTGCCGAGTATGTGGGGATCCTAATTCTATTCTTCGTTTTGCCTTCATTGAGTTTACAGATGAAGAGGGTGCAAGGGCTGCTTTGAACCTGTCAGGCACTATGCTTGGATATTACCCAGTAAGAGTGTTGCCTTCAAAAACTGCTATTGCACCAGTTAATCCCTCATTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGCTCAAGAACTATTTACTGCACAAATATTGACAAGAAGGTTACTCAGGCAGATGTTAGACTCTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGATTACCATCACTCTACTCGAATTGCATTTGTTGAATTCACAATGGCTGAAAGTGCAATTGCAGCTCTGAACTGTAGTGGCGTTATTTTGGGTTCACTGCCTATCAGGGTAAGTCCATCAAAGACACCTGTTCGTTCTCGTGCACCGCGTTCTTCAATGCACTGA 1203 0.4555 MAVAENAGAIIGSSSQNLDNSVVSSDSTVTNELEKSKARTGSIGNGMETNVQPINGDQNLNGVFNHQDRVPTTVSTPNGNYKPQMPQMRNGFEANGVQNQQMVVNDGGYGIKQMSNGVRNGEDGGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNNQGFLGGGGFGYTNNFLLHANYGNANGLTNRRRKNGYNQGKRRANNKMDMEKREEMTRKTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQADVRLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVILGSLPIRVSPSKTPVRSRAPRSSMH 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1280 400 MobiDBLite consensus disorder prediction 15 47 - -
Dere04g1280 400 Pfam Ataxin-2 C-terminal region 139 153 IPR009818 -
Dere04g1280 400 SUPERFAMILY RNA-binding domain, RBD 301 394 IPR035979 GO:0003676
Dere04g1280 400 SUPERFAMILY RNA-binding domain, RBD 186 291 IPR035979 GO:0003676
Dere04g1280 400 CDD RRM2_CID8_like 308 389 IPR034825 -
Dere04g1280 400 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 137 394 - -
Dere04g1280 400 FunFam Polyadenylate-binding protein-interacting protein 11 178 292 - -
Dere04g1280 400 MobiDBLite consensus disorder prediction 185 209 - -
Dere04g1280 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 279 IPR000504 GO:0003723
Dere04g1280 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 381 IPR000504 GO:0003723
Dere04g1280 400 CDD RRM1_CID8_like 214 292 IPR034823 -
Dere04g1280 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 290 IPR000504 GO:0003723
Dere04g1280 400 FunFam Polyadenylate-binding protein-interacting protein 10 306 384 - -
Dere04g1280 400 Gene3D - 298 396 IPR012677 -
Dere04g1280 400 Gene3D - 177 292 IPR012677 -
Dere04g1280 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 388 IPR000504 GO:0003723
Dere04g1280 400 SMART rrm1_1 313 384 IPR000504 GO:0003723
Dere04g1280 400 SMART rrm1_1 216 286 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1280 Dere-ChrDere04 14528565 14533349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1280 214 383 Eukaryotic Initiation Factors Gene Family AT1G34140 24.713 1.34e-10 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1280 04 14528565 14533349 Dere04g1280 04 14528565 14533349 ECH