Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1279 ATGGAGGCCAAGACTTCCAATACCTCGAGTTATGGTTATGGAGACTTGTCAACAACTACTCAACTATGGAGAATCATTTTGCAATTGCGACTTGAAGCAGAAGCTGACCCACCTAGGATGCTCAAACAAAGGACACCAACAGATTTCGATTCAAGGAATGTGGTTGGCCAGAACCCATCAAAATCATTTGAGTTGCCTCTCTTTTTCTTTAATCCAATCCTGAAATGCCTCATCATCATGTGGGTGAATGCTACTTTATTAAAAAAACTCTTCTTTTTCAAACTGGAAGTGGTTTTAGTGGTTCGAAGCTGTGTGATTCGAATTGGTATGTCACAGCAAAGGCAAAATACGATGGTGAGTCCACACAATGCCAAACAAGTTGGTGACACAACCTATACCAAGATCTTTATTGGAGGATTGGCTTGGGAGACTAGAAGAGACGCTCTGAAACACTATTTTGAGCAGTTTGGGGAGATCTTAGAGGCTGTTGTTATCACTGACAGAAACACTGGAAGATCAAAAGGCTATGGCTTTGTGACTTTCAAGGACCCAGATTCTGCAATAAGAGCTTGTCAGAATCCCTATCCTGTGATTGATGGAAGGAGAGCTAATTGTAATCTTGCAGCTCTTGGTGCACAAAGATTCAATCCATACACAACAGAGATAAATTTAGTACCACTTCTTGGTCTGTGGTACCAATCCCATTTCAAGGAACCTCCTCTTATTACAATCAGCACATACCCCAGTATGCATTTCCTTATCCACCTTACAGGTAAACAGTTCAAACATGCAAAAGTAAACTTTTGTGTCTGGTATCCTGGTTATCATTCTACACAAGAAATCTATCCAATGAACTACTATAATGTATATGGTGGACAGCAAGTTCCAATTCGTTGGCCTTCAGCAAATTACCACCCCTTTTATGGGGTTGGACAGTTTGTTCCACCAGCATACGCGAAAAAGGCACAATACTCTGACGCGTCATCTCAGGAATTGTTCACAGTTGTTGGCTTATCAGAACCCGTCTCTGCTTCTCCTTCAATACCTTCCACTGGATTAGTCTCAGGAACCGTAGCTGCTGCAGCAGCAGGAATGCCAGGAATCTCCACTGATCAGAAATCTTCAGCTTGA 1131 0.4209 MEAKTSNTSSYGYGDLSTTTQLWRIILQLRLEAEADPPRMLKQRTPTDFDSRNVVGQNPSKSFELPLFFFNPILKCLIIMWVNATLLKKLFFFKLEVVLVVRSCVIRIGMSQQRQNTMVSPHNAKQVGDTTYTKIFIGGLAWETRRDALKHYFEQFGEILEAVVITDRNTGRSKGYGFVTFKDPDSAIRACQNPYPVIDGRRANCNLAALGAQRFNPYTTEINLVPLLGLWYQSHFKEPPLITISTYPSMHFLIHLTGKQFKHAKVNFCVWYPGYHSTQEIYPMNYYNVYGGQQVPIRWPSANYHPFYGVGQFVPPAYAKKAQYSDASSQELFTVVGLSEPVSASPSIPSTGLVSGTVAAAAAGMPGISTDQKSSA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1279 376 SUPERFAMILY RNA-binding domain, RBD 115 208 IPR035979 GO:0003676
Dere04g1279 376 PANTHER BOULE-RELATED 115 332 - -
Dere04g1279 376 SMART rrm1_1 134 206 IPR000504 GO:0003723
Dere04g1279 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 192 IPR000504 GO:0003723
Dere04g1279 376 CDD RRM_RBM24_RBM38_like 133 208 - -
Dere04g1279 376 Gene3D - 109 217 IPR012677 -
Dere04g1279 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 210 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1279 Dere-ChrDere04 14519873 14524908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1279 129 209 C2H2 Transcription Factor Family AT2G19380 43.210 2.00e-14 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1279 04 14519873 14524908 Dere04g1279 04 14519873 14524908 ECH