Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1276 ATGGAAACCTCGTCCTATTCTATCCCCAACATCCAGAACATTTTATTGTCCTATTCTACGGCTCATTCGACCTTAGTTGTTGGGTTGGTCCTTGATCCCTTCTGCATGTCATGTGGGAAAGGAACTCAGACCTCAAATGGAGGATTTTCAGGTATCGTGCTTTCCTTCGTTCAGTTTGCAGGAATTCAAAACCAAAAAAAGAAAACAGAGAACATGAGTGACGTGGCAGAGGCACAAACGTTGGATGAAGAGATGGCTCAGATGTCATTTACAGCACATGATGTTGTAAGAGGGTTACAGCAGTGGATCTCTGCTCGTTACTGGGTCGTGCTTGACAAGGAAGCTAGAAAAAATAGCAGCAGTGTGAAGGTGCAGAAGCAGAACCTTGAAGCATTCCCGAGTAAGCCCATGATGATGATGGTTCCTCTTCCTCATAATCATCACTACCCTTCACTATCTCCCTTTGATAATAATCCCTCATTTGCTGCTGATGATGGTGATGGTGATGGTGATGGTCCCACGACTTATATGTCCTTCGCTAATCATACAAACCATTTTGTTAATGCTCATTTTGCTTCTGGTGCTGCACTTGTAAGACCCTTGCAGCCTTTTCACGTTGCTAACTCAACCGCCTTCAATTCCTCAGGGGGGATGATGGCGGCTTCATTGGGGTTTCCTTTCACAAATGCACAATGGAAGGAGCTTGAAAGACAAGCTTTGATATACAAGTACATGATGGCTTCTGTTCCTGTTCCTCCTCATCTCCTTATCCCCATGGCTGCTTCTCGCTCTCCCTTGGATAGCAGTTATAATCTAAGGTTTTCGAGCAGTAGTGATGCAGAGCCAGGTAGGTGCAGGAGAACAGATGGGAAAAAATGGAGATGTTCAAGAGAAGTAGCGCCTAACCACAAGTATTGCGAGCGTCATATGCACAGAGGTCGTCCCCGTTCAAGAAAGCCTGTGGAAATTCAAGCCAACACCAGCAATAATCAGCAAATCAAGATGGCGCCCCATGATTATCCTTCTTTGTCGTCTATTCCTACTGTTACTATTTCTAACTCCGCAATCAGTAATCATGGATCTTCATCTCAGTTTCTTGCGTCTACTACTACCAGTCAGCCATACTTTGAATCTTCATCTTCTCTTTCTCTTGATAATCTTGGAGTCAAAGCTGCTAATGTTGATTCCCTTGCTTCTGTTTCATCAAATAAGGAACCAAGAGGCTTGGACTCGATGCTGAAAGAAGACCCTACTTCCATGGCTGCTTCTGATCCAGAATGGCATCCTCTGATACAAAACAAATTTGTATTGAGTACCTGTACCAACCACTCCTCTATTTCAGTTTATCATCACAAGGACCCTCTGTATATGAATTCGTATGATCTATCCAGTTCTGCACTAGAACAACAGAACAAACGCTCTCCTCTGTACGCCAATCCTCTTTCATTTCCTCAGGAAAATCATCGGTCTGTAAAACCAAGGGGTTTCATTGATGCTTGGTCTAACGCAGAAACACGGGAAATCAATGCCAACAAAAGGGATTCTGTTGCATTAAATGCTAAGTTATCACTCTCTTGTATTGGTCCATTAATGGGTGGTGGTTTGGATGAAGACAACGGTAATACTCATATGGCTCCCCCTGCACCCTGGGTGGCTTCTTCCACACCTGGGGGACCACTAGCTGAAGTTTTGAGGCCCAGCACGGTGGCTACCCTCACCAATGAGACGCCCTCCAATTCATCCTCTCCGGTGAGTCCTGTGGTAACAGTGGTGTCATCTTCATCTGGGGTATTGCAGAAGACATTTGCTTCTTTGTCTGATAGTAGCTGTACTAGCAGTCCAAGAGTTGCGTCTTCCAGGGCTAATTCTGATATGCCCTTGCTCTGCTTGAGTCGCCCCAAAGCACCGTCTTCCTCTTGA 1920 0.451 METSSYSIPNIQNILLSYSTAHSTLVVGLVLDPFCMSCGKGTQTSNGGFSGIVLSFVQFAGIQNQKKKTENMSDVAEAQTLDEEMAQMSFTAHDVVRGLQQWISARYWVVLDKEARKNSSSVKVQKQNLEAFPSKPMMMMVPLPHNHHYPSLSPFDNNPSFAADDGDGDGDGPTTYMSFANHTNHFVNAHFASGAALVRPLQPFHVANSTAFNSSGGMMAASLGFPFTNAQWKELERQALIYKYMMASVPVPPHLLIPMAASRSPLDSSYNLRFSSSSDAEPGRCRRTDGKKWRCSREVAPNHKYCERHMHRGRPRSRKPVEIQANTSNNQQIKMAPHDYPSLSSIPTVTISNSAISNHGSSSQFLASTTTSQPYFESSSSLSLDNLGVKAANVDSLASVSSNKEPRGLDSMLKEDPTSMAASDPEWHPLIQNKFVLSTCTNHSSISVYHHKDPLYMNSYDLSSSALEQQNKRSPLYANPLSFPQENHRSVKPRGFIDAWSNAETREINANKRDSVALNAKLSLSCIGPLMGGGLDEDNGNTHMAPPAPWVASSTPGGPLAEVLRPSTVATLTNETPSNSSSPVSPVVTVVSSSSGVLQKTFASLSDSSCTSSPRVASSRANSDMPLLCLSRPKAPSSS 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1276 639 MobiDBLite consensus disorder prediction 399 425 - -
Dere04g1276 639 Pfam QLQ 226 258 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere04g1276 639 ProSiteProfiles WRC domain profile. 279 323 IPR014977 -
Dere04g1276 639 Pfam WRC 280 322 IPR014977 -
Dere04g1276 639 MobiDBLite consensus disorder prediction 606 620 - -
Dere04g1276 639 ProSiteProfiles QLQ domain profile. 226 261 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere04g1276 639 MobiDBLite consensus disorder prediction 539 559 - -
Dere04g1276 639 SMART QLQ_2 225 261 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere04g1276 639 PANTHER GROWTH-REGULATING FACTOR 5 203 509 IPR031137 GO:0005634|GO:0006351|GO:0032502
Dere04g1276 639 MobiDBLite consensus disorder prediction 606 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1276 Dere-ChrDere04 14491974 14496085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1276 217 373 GRF Transcription Factor Family AT5G53660 47.953 1.79e-40 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Dere04g1276 WRC 8.5e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1276 04 14491974 14496085 Dere04g1276 04 14491974 14496085 ECH