Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1271 ATGGGCCATTGCTGTAGCAAAAACCTTTCTGCCGTTGACAATGAAACCTCCGACGCCGACCCCCGCCATAAACATCCTCATTCGGCGGCGGCGTCGCCACAGCCTTCCGGCGATTCAGTCTCCGGAGCCAGCGATGCAACGCCTGGTCGCCAGACCCCCGCCAGCTCCTTCTCCAGCAGTCCCTTTCCCAGCCCACTCCCGCCCGGGGTGGCGCCGTCGCCAGCTAGGACTCCCGGTAGGAAATTTCGATGGCCTCTGCCGCCTCCTTCGCCGGCGAAGCCGATCATGGCGGCAATACTGAGACGGCAGGGGAAGGCTCAGCCGAAGGAGGGGCCCATACCAGAGGAGCAAGGCCAAAGTAGAGAGGGTGAGAGGCGGCTGGATAAAAGCTTTGGGTATGCCAAGAACATTGGGGCCAAGTACGAGTTGGGGAAAGAACTAGGCCGAGGACACTTTGGTCATACTTGCTGGGCGAAAGCTAAGAAGGGAGAGCTTAAGGGGAAGTCTGTAGCGGTGAAAATCATATCCAAAGCTAAGATGACAACAACCATAGCAATTGAAGATGTACGGAGGGAGGTGAAAATTTTGAAAGCCTTATCTGGACATAAGAATGTGGTCAAGTTTCATGATGCATTTGAGGATGCCAATAACGTCTACATAATAATGGAATTGTGTGAAGGAGGAGAACTGCTTGACAGAATTCTCTCAAGAGGTGGAAGATACACAGAAGAAGACGCTAAAGCTATCCTTGTACAAATTCTAAATGTAGTTTCCTTTTGTCATCTTCAAGGAGTTGTACATCGTGATCTAAAACCAGAGAATTTTCTCTTTGTCTCAAAAGATGACGATGCTCTGATGAAGGTTATTGATTTTGGTCTATCTGATTTTGTGTGGCCAGATCAACACCTGAATGATACTGTTGGCAGTGCCTACTATGTTGCACCTGAAGTGCTCCATGGATCTTACAGTGTTGAAGCAGACTTATGGAGTATTGGGGTTATTACATACATATTGTTGTGTGGAAGCAGGCCATTCTGGGCACGCACTGAATCAAGAATCTTCCGATCTGTGCTAAGAGCTAATCCTAACTTTGATGATTCGCCTTGGCCTTCAATATCACCAGAAGCTAAAGACTTCGTAAGAAGACTTTTGAACAAGGACCTCAGGAAAAGGATGACTGCTGCCCAAGCACTAACTCACCCATGGTTGAGAAATGAAAGACAGGCAATTCCTTTAGACATTTTAATCTACAAGTTAGTCAAGTCATATGTGCGTGCCACACCTTTGAAACGTGCAGCACTGAAGGCTCTCTCTAAAGCATTGACAGAAGATGAGCTTATCTACCTTAGAGCACAGTTTAGCCTCTTGGAACCAAAAGATGGTTACGTGTCCCTTGACAATTTTAGAGCGGCTCTTATGAAAAATGCAACTGATGCTATGAAGGAATGTAGGGTCCCGGACATTTTAAATTTGATGGATCCACTTGCGTACAAAAACATGGACTTCGAAGAGTTTTGTGCTGCTGCAATCAGTATATACCAGCTCGAGGTTCATCCAGAGTGGGACAAAATTGCAAAAACAGCATTTGAGTATTTCGAACAAGCAGGAAACCGAGTCATTTCGGTAGAGGAGTTAGCACAGGAGATGAATCTGGGTGCTTCAGCTTACTCTTTTCTAGGCAATTGGATCCGACAATCCGACGGAAAACTCAGCTTTGGTGGATATGCCAAGTTTTTGCATGGCATCACAATTCGTAGTTCAAATATAAGACAGCGACAGCGACAGCAACAGCAACAGAATGAATGA 1806 0.4679 MGHCCSKNLSAVDNETSDADPRHKHPHSAAASPQPSGDSVSGASDATPGRQTPASSFSSSPFPSPLPPGVAPSPARTPGRKFRWPLPPPSPAKPIMAAILRRQGKAQPKEGPIPEEQGQSREGERRLDKSFGYAKNIGAKYELGKELGRGHFGHTCWAKAKKGELKGKSVAVKIISKAKMTTTIAIEDVRREVKILKALSGHKNVVKFHDAFEDANNVYIIMELCEGGELLDRILSRGGRYTEEDAKAILVQILNVVSFCHLQGVVHRDLKPENFLFVSKDDDALMKVIDFGLSDFVWPDQHLNDTVGSAYYVAPEVLHGSYSVEADLWSIGVITYILLCGSRPFWARTESRIFRSVLRANPNFDDSPWPSISPEAKDFVRRLLNKDLRKRMTAAQALTHPWLRNERQAIPLDILIYKLVKSYVRATPLKRAALKALSKALTEDELIYLRAQFSLLEPKDGYVSLDNFRAALMKNATDAMKECRVPDILNLMDPLAYKNMDFEEFCAAAISIYQLEVHPEWDKIAKTAFEYFEQAGNRVISVEELAQEMNLGASAYSFLGNWIRQSDGKLSFGGYAKFLHGITIRSSNIRQRQRQQQQQNE 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1271 601 SUPERFAMILY EF-hand 436 581 IPR011992 -
Dere04g1271 601 ProSiteProfiles Protein kinase domain profile. 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1271 601 SUPERFAMILY Protein kinase-like (PK-like) 140 425 IPR011009 -
Dere04g1271 601 Gene3D - 442 510 - -
Dere04g1271 601 ProSitePatterns Protein kinases ATP-binding region signature. 147 173 IPR017441 GO:0005524
Dere04g1271 601 Gene3D - 423 553 - -
Dere04g1271 601 CDD STKc_CAMK 140 402 - -
Dere04g1271 601 SMART serkin_6 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1271 601 MobiDBLite consensus disorder prediction 60 74 - -
Dere04g1271 601 Gene3D Phosphorylase Kinase; domain 1 137 227 - -
Dere04g1271 601 Pfam Protein kinase domain 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g1271 601 FunFam CDPK-related kinase 3 133 305 - -
Dere04g1271 601 MobiDBLite consensus disorder prediction 1 127 - -
Dere04g1271 601 Gene3D Transferase(Phosphotransferase) domain 1 228 422 - -
Dere04g1271 601 PANTHER SERINE/THREONINE-PROTEIN KINASE 125 569 - -
Dere04g1271 601 FunFam Calcium-dependent protein kinase SK5 313 408 - -
Dere04g1271 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Dere04g1271 601 FunFam CDPK-related kinase 1 439 510 - -
Dere04g1271 601 MobiDBLite consensus disorder prediction 32 59 - -
Dere04g1271 601 FunFam CDPK-related kinase 1 134 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1271 Dere-ChrDere04 14445909 14451812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1271 1 586 EF-hand Containing Proteins AT3G50530 55.924 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere04g1271 Pkinase 9.2e-70 CL0016