Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1267 ATGATGGAGGGCGAAGAGTATATTCAAGCATCAAAAGAACATAATGTTGTAAGCTTCACCAGCCCAAAGCCACCTCCGAATCCGAAGAAGAAGAACAAGATAGAAAACAAGAGGAGGTTCAGTGATGAACAAATTCGATCACTTGAGTGCATATTTGAATCAGAGTCAAAGCTCGAACCAAGGAAGAAGATGCAGCTAGCAAGAGATCTTGGGTTGCAGCCTCGCCAAGTCGCCATATGGTTCCAAAACAGAAGAGCCAGATGGAAATCAAAACTGATAGAGCAAGACTACAGGAAACTCAGAGATGAGTACGACAGTTTAGCATCTTTGTTTGAGTCCATAAAGAAAGAGAAGGAATCTTTGCAGGCTGAGGTACAAAAGCTAAGAGATTTAATGGAGACATGTCATGATGGTAGAAGGGAAAGCAAGGTTGGCAATGAAAATAGCACAGAGGATGGTGCTTCAGGCAGTGGAAACAGCAATTGGAGGGCTGAGGCAAAGCCATGTTTCTCAAATGAAGGTTCAGAGGACGCCATGACTGATAATATGAGAGAGTTGGCATCTCTTGAAAAATGGTGTAGTGTTGATCCAAGTGGTCTATTGGATCAATCTTGCAGCAGTTCACAATGGTTGGATTTCTGGAATTGA 648 0.4275 MMEGEEYIQASKEHNVVSFTSPKPPPNPKKKNKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKLIEQDYRKLRDEYDSLASLFESIKKEKESLQAEVQKLRDLMETCHDGRRESKVGNENSTEDGASGSGNSNWRAEAKPCFSNEGSEDAMTDNMRELASLEKWCSVDPSGLLDQSCSSSQWLDFWN 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1267 215 Coils Coil 97 134 - -
Dere04g1267 215 CDD homeodomain 37 91 IPR001356 GO:0003677
Dere04g1267 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 30 163 IPR045224 GO:0003700
Dere04g1267 215 Pfam Homeodomain 37 89 IPR001356 GO:0003677
Dere04g1267 215 Gene3D - 35 95 - -
Dere04g1267 215 FunFam Homeobox-leucine zipper protein ATHB-7 18 91 - -
Dere04g1267 215 Pfam Homeobox associated leucine zipper 93 132 IPR003106 GO:0006355|GO:0043565
Dere04g1267 215 MobiDBLite consensus disorder prediction 148 166 - -
Dere04g1267 215 SMART HOX_1 34 95 IPR001356 GO:0003677
Dere04g1267 215 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Dere04g1267 215 PRINTS Lambda-repressor HTH signature 71 87 IPR000047 GO:0003677
Dere04g1267 215 PRINTS Lambda-repressor HTH signature 62 71 IPR000047 GO:0003677
Dere04g1267 215 MobiDBLite consensus disorder prediction 136 177 - -
Dere04g1267 215 MobiDBLite consensus disorder prediction 1 38 - -
Dere04g1267 215 SUPERFAMILY Homeodomain-like 18 90 IPR009057 -
Dere04g1267 215 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1267 Dere-ChrDere04 14408764 14409494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1267 1 124 Homeobox Transcription Factor Family AT2G46680 59.375 2.19e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere04g1267 Homeodomain 2e-17 CL0123