Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1266 ATGGGATTGGCTCTGTCTCGGTCAAATACTGATGAGGATCTTCTTCCTTCTTATGGAACTAAGATCAAGTCAAATTTCATAGCAGAGGCCGTTTCGGCGGGAGTCAAGAGAGAAGCAGGCATAGAGAAAATCGGAAAAAAAATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATTGACAATGTGAAGGCTAAGATTCAGGACAAAGAAGGTATTCCACCGGACCAGCAAAGATTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGTACTCTTGCCGATTACAACATCCAGAAAGAGTCGACGTTGCACCTTGTTTTGAGGCTTCGTGGTGGCATTATCGAGCCATCTTTGATGGCATTGGCCAGGAAATATAATCAGGACAAGATGATCTGCCGCAAGTGTTATGCTCGTTTACACCCCCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACATAGCAACCAGCTGAGGCCAAAGAAGAAGATCAAGTAA 528 0.4697 MGLALSRSNTDEDLLPSYGTKIKSNFIAEAVSAGVKREAGIEKIGKKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1266 175 Gene3D - 127 175 IPR038587 -
Dere04g1266 175 Pfam Ribosomal L40e family 125 174 IPR001975 GO:0003735|GO:0005840|GO:0006412
Dere04g1266 175 ProSitePatterns Ubiquitin domain signature. 74 99 IPR019954 -
Dere04g1266 175 FunFam ubiquitin-60S ribosomal protein L40 126 175 - -
Dere04g1266 175 FunFam Ubiquitin-60S ribosomal L40 fusion 48 125 - -
Dere04g1266 175 SMART Ribosomal_L40e_3 124 175 IPR001975 GO:0003735|GO:0005840|GO:0006412
Dere04g1266 175 SMART ubq_7 48 119 IPR000626 GO:0005515
Dere04g1266 175 Pfam Ubiquitin family 50 121 IPR000626 GO:0005515
Dere04g1266 175 CDD Ubl_ubiquitin 48 123 - -
Dere04g1266 175 Gene3D - 43 126 - -
Dere04g1266 175 SUPERFAMILY Zn-binding ribosomal proteins 123 174 IPR011332 GO:0006412
Dere04g1266 175 PANTHER UBIQUITIN 48 134 - -
Dere04g1266 175 PRINTS Ubiquitin signature 79 99 IPR019956 -
Dere04g1266 175 PRINTS Ubiquitin signature 58 78 IPR019956 -
Dere04g1266 175 PRINTS Ubiquitin signature 100 121 IPR019956 -
Dere04g1266 175 ProSiteProfiles Ubiquitin domain profile. 48 123 IPR000626 GO:0005515
Dere04g1266 175 SUPERFAMILY Ubiquitin-like 43 123 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1266 Dere-ChrDere04 14402430 14406316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1266 48 175 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 9.20e-93 264