Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1257 ATGGCGGGTTCGTCAGAGACGAGGTTCTTCCAGGAGTTGTTATTTTACGCAGCGAGCGCGGCACTTAGTTGCTTGGTCTTGTTTGCTGGGCTCCGACACCTCGACCCGAATCGAGAGGCATCGAAGAAAGCTCTTCAACGCAAGAAAGAGACAGCCAAGCGTCTCGGTCGTCCTCTGATTCAGACAAACCCTTACGAGGATGTGATAGCCTGTGATGTTATAAATCCTGACCACATTGATGTGGAGTTTGACTCTATTGGGGGACTGCAAAAAATCAAGCAAGCGTTGTCTGAGCTTGTTATACTGCCTCTAAAACGACCTGAACTATTTTCTCACGGCAAGCTTCTTGGCCCACAAAAGGGGGTCCTGTTGTATGGGCCCCCTGGTACTGGAAAAACAATGCTTGCCAAAGCTATTGCTAAGGAGTCTGGATCAGTTTTTATTAATGTAAGGATATCAAACCTTATGAGCAAGTGGTTTGGTGATGCCCAGAAACTTGTGGCTGCTGTATTTAGCCTGGCTTATAAGCTCCAGCCTGCAATTATATTCATTGATGAAGTTGACAGTTTTTTGGGTCAGCGTCGTACAACAGATCATGAGGCAATGTTAAACATGAAAACTGAGTTCATGGCTTTATGGGATGGATTTACCACTGATCAGAATGCTCGAGTTATGGTCCTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGAATTCCAGATCAAGGGGAGAGGGCTGAGATATTGAAGGTTATATTAAAGGATGAGAGTGTTGAAGACAACATTGACTTTGATCATATAGCAGGCTTGTGTGAGGGATATACTGGTTCAGATCTATTTGAACTCTGCAAGAAGGCTGCCTATTTTCCTGTTAGGGAATTGCTGGATGAAGAAAAGCGAGGGCAACATTCCCTTGAGCCAAGGCCATTGACGCAGTCAGATTTGGAGAGGGCCCTAGCCTCTTCACGGAAAACAAAGGTTGTTGCTGGTGAATACAGTGGATTAAACGCAGAGTCACCAAGACGGAAAGGACACAGGGAGTCAGGTGATTATCAGTTTCAAGCTGCAATCAATGAACTCTCTAAGCTTGTGGTTTCTCAAATTTTTAACCTTCAATCAGATGCCCAGGATCCTTGA 1176 0.4507 MAGSSETRFFQELLFYAASAALSCLVLFAGLRHLDPNREASKKALQRKKETAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFDSIGGLQKIKQALSELVILPLKRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGSVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEAMLNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDQGERAEILKVILKDESVEDNIDFDHIAGLCEGYTGSDLFELCKKAAYFPVRELLDEEKRGQHSLEPRPLTQSDLERALASSRKTKVVAGEYSGLNAESPRRKGHRESGDYQFQAAINELSKLVVSQIFNLQSDAQDP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1257 391 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 45 344 - -
Dere04g1257 391 SMART AAA_5 118 254 IPR003593 GO:0016887
Dere04g1257 391 FunFam ATPase family AAA domain-containing protein 1 80 256 - -
Dere04g1257 391 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Dere04g1257 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 334 IPR027417 -
Dere04g1257 391 CDD RecA-like_ATAD1 85 250 - -
Dere04g1257 391 Gene3D - 253 333 - -
Dere04g1257 391 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Dere04g1257 391 Gene3D - 80 337 IPR027417 -
Dere04g1257 391 Pfam AAA+ lid domain 274 310 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1257 Dere-ChrDere04 14343174 14348625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1257 77 325 Calmodulin-binding Proteins AT3G56690 33.992 1.27e-36 140