Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1256 ATGATTTGGGCTAGCTCCATCTCTTCCATTCTTTTCGTCCTTCTTCTCTTTCTTCTTATCCTTCGTTTTTTCCGCAAAACTTCTGTATTATACATTCTTCAAAGATGGTGGTTTACCTTCGAAAACCACCTCCATATTCACCAATCCTTCAAAATCCCACGCTACAATGAGCATTTCCAGGAAAACCAACTTTACCAAAAAACCCTCACGTACCTTAGCTCACTACCTTCCGTCGAAGACTCTGATTTCACAAACCTCTTCTCTGGTTCCAAACCTAGTGAAATTTTCCTTCACCTCGATGCTAACCAGACAGTGCACGACGTTTTTCTAGGCGCCAAGGTTTCCTGGACGAAGGAGAAATCCGAGGGAGACGTTAATTCAGCACTGGCACTCAGAATTAAGAAAAAAGACAAACGCAGAATTTTCCGTCAATACTTCCAGCACATCTTCACGGTGGCAGATGAAGTCGAACAAAAGAGAAAAGAGATTAAGTTATACATGAACTCTGGAAGTGACGAGAACTCACGATGGCGATCGGTTCCATTCACCCACCCGGCGAGCTTCGACACGGTTGTGATGGACGCCGAGCTGAAAAACAAGGTCAAATCCGATCTTGATCAGTTTCTCAAGTCCAAGCAGTACTATCACCGGCTAGGCCGTGTTTGGAAACGGAGTTACCTCCTCTACGGTGCGTCCGGCACGGGAAAATCCAGTTTCATCGCAGCGATGGCAAGGTTCCTGTGTTACGACGTCTACGATATCAACATCTCCAGAGTTTCGGACGACTCCGATTTGACGATGCTATTGTTGCAAACAACGAGTAAATCGGTGATCGTCATCGAAGACCTTGATAGATTCCTCTCAGGGAAATCAACGGCTGTGAGTTTGTCAGGCGTGCTGAACTTCATGGACGGAATTATATCGTGCTGTGGGGAAGAGCGGGTGATGGTATTCACGACGAGCGCGAAAGAAGAGATTGATCCAGCGGTGATGAGGCCTGGGAGGATTGACGTTCGCATACACTTTCCCTTGTGTGATTTCTCCACCTTCAAGGTTTTAGCGAGTGGTTATTTGGGGGTGAAGGATCACAAGCTTTTTCCTCAAGTGGAGGAGGTTTTTCAGGCCGGGGCGAGGATGAGCCCGGCCGAGATCGGTGAAATCATGATCTCGAACCGGAACTCGCCGAGCCGGGCGTTGAAAACCGTCATCACGGCTTTGCAAATCAACGGCGGTGATGGGAGGAGGGTTCAGAGGTTGAGCGAAGGTGGGTCGGGTCGGAATAGCGGAGAGTTGGGTCAACACGATGCTCTTGTATGTCAAGAGAATGTTCATACGATGAGGGAGTTTCGGAATTTGTATGGGCTTTTGCGTTTGGGAAGTAAGAGGAAAGAGGAGCATTCTGGGCCCATAGAGAAAGAAGGCCCACATATCCAAGCATAA 1440 0.4799 MIWASSISSILFVLLLFLLILRFFRKTSVLYILQRWWFTFENHLHIHQSFKIPRYNEHFQENQLYQKTLTYLSSLPSVEDSDFTNLFSGSKPSEIFLHLDANQTVHDVFLGAKVSWTKEKSEGDVNSALALRIKKKDKRRIFRQYFQHIFTVADEVEQKRKEIKLYMNSGSDENSRWRSVPFTHPASFDTVVMDAELKNKVKSDLDQFLKSKQYYHRLGRVWKRSYLLYGASGTGKSSFIAAMARFLCYDVYDINISRVSDDSDLTMLLLQTTSKSVIVIEDLDRFLSGKSTAVSLSGVLNFMDGIISCCGEERVMVFTTSAKEEIDPAVMRPGRIDVRIHFPLCDFSTFKVLASGYLGVKDHKLFPQVEEVFQAGARMSPAEIGEIMISNRNSPSRALKTVITALQINGGDGRRVQRLSEGGSGRNSGELGQHDALVCQENVHTMREFRNLYGLLRLGSKRKEEHSGPIEKEGPHIQA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1256 479 Gene3D - 178 340 IPR027417 -
Dere04g1256 479 SMART AAA_5 222 346 IPR003593 GO:0016887
Dere04g1256 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 405 IPR027417 -
Dere04g1256 479 Gene3D - 341 406 - -
Dere04g1256 479 PANTHER BCS1 AAA-TYPE ATPASE 40 407 - -
Dere04g1256 479 Pfam ATPase family associated with various cellular activities (AAA) 227 344 IPR003959 GO:0005524|GO:0016887
Dere04g1256 479 ProSitePatterns AAA-protein family signature. 314 332 IPR003960 GO:0005524|GO:0016887
Dere04g1256 479 Pfam Domain associated at C-terminal with AAA 32 117 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1256 Dere-ChrDere04 14339300 14340739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1256 218 342 Calmodulin-binding Proteins AT3G56690 28.058 4.88e-07 50.4