Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1248 ATGCGAATTAGCGCGCCAAGCACCTTCCAAAATAAATTTAGGTCACAAGCTGAGTCCCTCCGATCCCCAGCATTTCTCGCGTCTACTGCTCTCGTCATTGCATCGTCGAGACAATCAATGTCGCTCCGACGAAGGACTCATGCGCCGAAACCTGTATCGAAGTCCACTTCAGTCGGTAAAATCTCCGATTACGATGATGTGAGCTGCGAAGAATGTGGATCTGGTCATTCGCCAGCCAAGTTGATTCTCTGCGACAAATGTGATCGAGGATACCACCTCTTCTGCCTCAGACCCATTATTGTTTCTGTTCCCAAGGGTTCCTGGCTCTGCCCCTCTTGCTCTAGGGACAAGAAGCCCAAGTCTTTTCCTCTTGTTCAGACCAAAATTATTGATTTCTTTCGCATTCGACGATCTTTGCAAGTTACCCAAACATCCTGTCAAGATAGTCGAAAGAAAAGAAAGCGGGCTACAAGCCTAGTGGTGTCGAAAAAGAAAAGGAAGCTACTGCCATTCTGCCCATGTGAGGATCCTTCAAGGAGACTGGAACAGATGGCATCTCTGGCAACGGCATTGACAGCAACTAATGCAAAATTCAGCAATGAGCTTACTTACATACCTGAAATGGCACCAAGATCAGCTAATTGCGCGGCTCTTGAACAGGGTGGAATGCAGGTTTTGTCGAAAGAAGACACTGATACCTTGAACTTGTGCAAGAGTATGATGGAAAGAGGAGAGTGGCCACCCCTCATGGTTGTTTATGATCCACAAGAAGGGTTCACCGTGGAGGCAGATAAATTTATAAGAGACTTGACAATAATCACAGAATATGTCGGAGATGTTGACTATTTGAGGAATCGTGAAAATGATGATGGGGATAGCATGATGACGCTTCTTTCAGCTTCTGATCCTTCTCGAACGTTAGTAATCTGTCCGGACAAACGAAGTAACATCGCCCGGTTTATTAACGGCATTAACAATCACACACCGGAAGGAAAAAAGAAGCAAAACTTAAAGTGCGTGAGGTTTGACGTCAATGGTAAGTGTCGGGTTCTATTGATTGCAAACAGAGACATATCAAAGGGGGAGAGATTGTACTATGACTACAATGGAAGCGAGCATGAATATCCAACTGAACACTTCGTGTAA 1146 0.452 MRISAPSTFQNKFRSQAESLRSPAFLASTALVIASSRQSMSLRRRTHAPKPVSKSTSVGKISDYDDVSCEECGSGHSPAKLILCDKCDRGYHLFCLRPIIVSVPKGSWLCPSCSRDKKPKSFPLVQTKIIDFFRIRRSLQVTQTSCQDSRKKRKRATSLVVSKKKRKLLPFCPCEDPSRRLEQMASLATALTATNAKFSNELTYIPEMAPRSANCAALEQGGMQVLSKEDTDTLNLCKSMMERGEWPPLMVVYDPQEGFTVEADKFIRDLTIITEYVGDVDYLRNRENDDGDSMMTLLSASDPSRTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVNGKCRVLLIANRDISKGERLYYDYNGSEHEYPTEHFV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1248 381 FunFam Histone-lysine N-methyltransferase ATXR5 153 381 - -
Dere04g1248 381 CDD PHD_RSF1 69 113 - -
Dere04g1248 381 Gene3D SET domain 153 381 IPR046341 -
Dere04g1248 381 SUPERFAMILY FYVE/PHD zinc finger 59 120 IPR011011 -
Dere04g1248 381 ProSiteProfiles SET domain profile. 247 369 IPR001214 GO:0005515
Dere04g1248 381 SUPERFAMILY SET domain 239 371 IPR046341 -
Dere04g1248 381 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 148 379 - -
Dere04g1248 381 Gene3D - 11 117 - -
Dere04g1248 381 SMART PHD_3 68 114 IPR001965 -
Dere04g1248 381 CDD SET_ATXR5_6-like 244 381 - -
Dere04g1248 381 ProSiteProfiles Zinc finger PHD-type profile. 66 116 IPR019787 -
Dere04g1248 381 Pfam PHD-finger 69 115 IPR019787 -
Dere04g1248 381 Pfam SET domain 90 369 IPR001214 GO:0005515
Dere04g1248 381 ProSitePatterns Zinc finger PHD-type signature. 69 113 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1248 Dere-ChrDere04 14256316 14258817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1248 64 130 C2H2 Transcription Factor Family AT3G01460 35.821 1.66e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere04g1248 SET 6.5e-05 No_clan