Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1235 ATGGCCTTGTCGAGCCCACAAATCCAAAGATTCCTCTTAACCAAGCTCCATGGCCGCTCCTCGTCCAATAATAGCATCCGCAGAAACTGCTTCACCACTACGAGCAGAGGCCGATGCTGTTCTGCCATAGCCATTGATACCCCATCGTCTTTGACGGACGTGGCAGGAATAAGATGGGGATCCATTGCTTTGCAGGGTCTTCGGGAAGAGATGGAAGACGATATTCTTGTGCGGCCTGATGGCCCCGATGGCTTCTCTTTTGCCGCTGTGTTTGATGGCCATGGAGGATTTTCCTCCGTCGAGTTCCTCAGGGATGAACTGTATAAGGAGTGTCTTGCAGCTTTACAAGGCGGGTTACTATTGGGTAGAAAAGATTTCAAAGCCATTAAAGCTGCATTAGAGGAGGCATTTGTCAATGCTGACACAAGTTTGTTAAAATGGCTTGAAATGAAAGTTGAGGAGGATGAATCTGGCGCTACAGCAACTGCAGTGTTCATTGGAGATGATATGCTGCTTATTTCACATATAGGTGACTCATCTGTGGTTCTAAGCAGATCTGGAAGAGCAGAAGTGCTGACTTATCCTCACCGACCATATGGGAGCAATAAGGCCTCTCTTCAAGAAATTAAAAGAATTAGAGATGCAGGTGGATGGATTGTCAATGGTAGAATATGTGGAGACATTGCTGTATCTCGCGCATTTGGAGACCTGAGATTCAAAACAAAGAAAAATGAGATGCTGAAGAAAGGGGTCGAGGAAGGAAGATGGTCAGAAAAATTTGTTTCCCGTGTACAGCTCAACAATGATCTGGTGATAGCATGCCCTGATATCTATCAAGTAGCTCTTGGCTCGGATGCAGAGTTTGTAGTATTGGCGTCTGATGGCTTATGGGATTACATGAGCAGCTCGGATGCAGTTTCTTTTGTGAGGGATCAACTTCGAAAGCATGGAAATATTCAGCTAGCCTGTGAAGCTCTTGCACAAGCAGCATTGGACCGACGCACACAGGATAATGTTAGCATCATAATTGCTGATTTAGGGCGGACAGATTGGCAGAACTTGCCGCTGCAGCAGCAGAACGTTATATATGAGATGGTTCAAGCTTTTGCCACTATTGGAATTGTGTCACTCGGACTTTGGTTTTCATCCCAGATTTTGTTATGA 1164 0.4562 MALSSPQIQRFLLTKLHGRSSSNNSIRRNCFTTTSRGRCCSAIAIDTPSSLTDVAGIRWGSIALQGLREEMEDDILVRPDGPDGFSFAAVFDGHGGFSSVEFLRDELYKECLAALQGGLLLGRKDFKAIKAALEEAFVNADTSLLKWLEMKVEEDESGATATAVFIGDDMLLISHIGDSSVVLSRSGRAEVLTYPHRPYGSNKASLQEIKRIRDAGGWIVNGRICGDIAVSRAFGDLRFKTKKNEMLKKGVEEGRWSEKFVSRVQLNNDLVIACPDIYQVALGSDAEFVVLASDGLWDYMSSSDAVSFVRDQLRKHGNIQLACEALAQAALDRRTQDNVSIIIADLGRTDWQNLPLQQQNVIYEMVQAFATIGIVSLGLWFSSQILL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1235 387 CDD PP2Cc 57 346 IPR001932 -
Dere04g1235 387 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169
Dere04g1235 387 Gene3D - 57 352 IPR036457 -
Dere04g1235 387 ProSiteProfiles PPM-type phosphatase domain profile. 58 346 IPR001932 -
Dere04g1235 387 Pfam Protein phosphatase 2C 60 339 IPR001932 -
Dere04g1235 387 SMART PP2C_4 48 344 IPR001932 -
Dere04g1235 387 SUPERFAMILY PP2C-like 55 347 IPR036457 -
Dere04g1235 387 PANTHER PROTEIN PHOSPHATASE 2C 38 344 IPR015655 GO:0004722|GO:0006470
Dere04g1235 387 FunFam Protein phosphatase 2C 57 57 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1235 Dere-ChrDere04 13830580 13834702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1235 1 323 PP2C-type Phosphatase Gene Family AT4G27800 63.720 6.94e-147 417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1235 04 13830580 13834702 Dere04g1235 04 13830580 13834702 ECH