Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1223 ATGGACTTGGACAACATCGAGTGCGTATCATGCTCGGACGGCATGGATGAGGATGAGATCCAACACCATAGTATGCATCCTCACCCCTATCATCACTCTGAGGTTTCATCCACAAAGCCTCGCAATGGCGCCACCAATATGGGTCCTACGGCCATTGCTCCGGCAACCAGTGTCCACGAATTGCTGGAATGCCCTGTCTGTACCAATTCAATGTACCCACCAATTCATCAGTGTCACAATGGGCACACCCTGTGTTCCACATGTAAAACAAGGGTGCACAACCGATGTCCCACGTGCAGACAAGAGCTTGGAGATATTAGGTGTCTGGCTCTGGAGAAGGTGGCCGAATCACTTGAGTTACCGTGCAAATACTATTCTCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGGCAGTATGCAATTTTAGGCCATACAATTGTCCTTATGCTGGATCAGAGTGTTCTGTTGTCGGGGACATCCCTTTCCTCGTTGCACATTTGAGGGATGATCATAAGGTGGACATGCACACAGGATGTACATTTAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTGGAGAATGCAACTTGGATGCTCACAGTATTTAATTGTTTTGGCCAATACTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGTATGGCCCCTGTTTACATGGCATTCCTTCGTTTCATGGGTGATGAGAATGAGGCTCGGAACTATAGCTATAGCCTAGAAGTTGGGGCAAATGGGAGGAAACTGATCTGGGAGGGTACTCCAAGGAGTATCCGGGATAGCCATCGTAAAGTTAGAGATAGCCACGATGGTCTTATCATCCAACGAAATATGGCCCTCTTTTTCTCTGGCGGGGATCGGAAGGAGCTTAAGCTCAGAGTTACCGGAAGAATATGGAAAGAACAACAGAATCCGGATGCTGGGGTGTGTATACCAAATCTTTGTAGCTGA 981 0.4709 MDLDNIECVSCSDGMDEDEIQHHSMHPHPYHHSEVSSTKPRNGATNMGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFNCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1223 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 116 IPR013083 -
Dere04g1223 326 FunFam E3 ubiquitin-protein ligase SINAT3 116 172 - -
Dere04g1223 326 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 43 311 - -
Dere04g1223 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 170 IPR013083 -
Dere04g1223 326 Pfam Seven in absentia protein family 106 305 IPR018121 GO:0005737|GO:0006511|GO:0007275
Dere04g1223 326 ProSiteProfiles Zinc finger RING-type profile. 64 100 IPR001841 -
Dere04g1223 326 SUPERFAMILY RING/U-box 53 106 - -
Dere04g1223 326 ProSiteProfiles Zinc finger SIAH-type profile. 117 177 IPR013010 GO:0008270
Dere04g1223 326 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 171 305 IPR008974 GO:0005515
Dere04g1223 326 MobiDBLite consensus disorder prediction 20 35 - -
Dere04g1223 326 MobiDBLite consensus disorder prediction 20 42 - -
Dere04g1223 326 FunFam E3 ubiquitin-protein ligase SINAT3 11 115 - -
Dere04g1223 326 CDD RING-HC_SIAHs 62 100 - -
Dere04g1223 326 SUPERFAMILY TRAF domain-like 117 309 - -
Dere04g1223 326 FunFam E3 ubiquitin-protein ligase SINAT5-like 173 305 - -
Dere04g1223 326 CDD Sina 178 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1223 Dere-ChrDere04 13702600 13707015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1223 34 312 C3H Transcription Factor Family AT2G41980 77.061 1.04e-164 459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1223 04 13702600 13707015 Dere04g1223 04 13702600 13707015 ECH