Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1219 ATGTATGCGAGATTACCACGAATCGAAGGCATGTCTTTAGAAGAATCACTTTCCAAACCATGTTGCCTCCAGAAATTGGTAAACAGAAGAAGAAAATATTTTATCTTAGCAAAAGTTCCAGAGGTTCTTGCTTGTGTCCCTTCATTGCTGATTCACATAATACAACCACGAAACTACCCTCTCATTTCACTCGCACTCACACCTCCCAACATGGACTTCGGTAGGATCGGACCCTCTGACCCGGGTGGCTCCTCCAGGCGCTCCGACGCCCCCATCATAGCCAAGCCATCCTCCTCATTAACCACCTCCTCTGCCTCCAATAAGAAGAAGCTCATCTTCTTGTTAGTTCTCGCCGTCGTATTAATTGCCGCCTCCGCCATCTCCGCCGTGGTTGTCATCCGTATCCGGGCCCGTGATTCTGGCCCAAGTGGGCCGGATATCCGGGGAAAGCCCACCCAGGCAATTTCTCGGACCTGCAGCAGAACCCAATTCCCTGCGCTGTGTGTGAACTCACTCCTGGAGTTCCCGGGTTCAACGACGGCATCGGAGCAAGAGCTGGTCCACATTTCCTTTAACATGACCTTGCAGCACCTGAACAAAGCTCTTTACTCCTTCACCGGCTTCTCCAACGCCCAGATGGATCCAAGCGTTCGATCGGCGTACGAAGACTGCCTCGAGCTCCTGGATGATTCCGTGGACGCTCTCGCACGCTCGCTCACCTCCGTCGCCCCGTCCCCGTCGGACGGCAGCATCAGATTGGGTGGGTCCACGGATGACGTGATGACGTGGCTGAGCGCCGCTCTCACAAATCAGGACACGTGTGCGGATGGGTTCGCGGAGATGAGCGGCGGTGTGAAGGATCAGATGGCCAATAATTTGAAGGACTTGTCGGAACTGTTGAGCAATTGCCTGGCGATTTTCTCGACCAGTGGGGCTGGCGGTGGCGATTTCGCGGGAGTGCCCATACAGAACAGGAGAAGATTGATGGGAGAGAATAATGCCGATATCTCAGGCGAGATTTCGGGAAATTTGCCGAAATGGTTAAGCAGACGAGATAGGAGACTGTTGAGTTTGCCAGTACCGGCGATACAAGCCGATATAGTGGTGTCGCAGAATGGGAATGGAACGGTCAAGACGATCACGGAGGCCATAAAGAAGGCTCCCGAGCACAGTGAACGCCGGTTCATAATCTACGTGACGGAGGGAAGGTATGAAGAGAAAAATTTAAAGGTGGGAAGGAAGAAAACCAATTTGATGTTCATAGGGGACGGGACGGGCAAGACAATCATCACAGGTAAAAGAAATGTTGTTGATGGCTTGACGACGTTCCACACGGCTTCCTTCGCTGCAACCGGTGCTGGCTTCATCGCACGTGACATAACGTTCGAGAACTATGCCGGTCCGAGCAAGCACCAGGCGGTGGCCCTCCGTGTGGGAGCTGACCATGCGGTGGTTTACCGTTGCGACATCACCGGTTACCAAGACACATGTTATGTGCACTCCAACCGTCAGTTCTTCCGCGAATGTAACATTTACGGAACAGTAGACTTTATATTTGGTAACGCTGCGGTAGTGTTCCAAAACTGCAGCCTCTATGCTCGCAAGCCCATGGCCCAACAAAAGAACACGATCACGGCCCAAAACAGAAAGGACCCGAATCAGAACACGGGTATATCAATCCACGATTGTCGGATCCTAGCCGCTCCGGATCTCGAGCCAGTAAAGGGAAGCATCCCCACGTATCTTGGGCGTCCGTGGAAATTATACTCTAGGACAGTGTACATGTTATCATACATGGGCGATCATATACATCCACGTGGATGGCTGGAGTGGAATGGAGATTTTGCTTTGGACACGTTGTACTATGGGGAGTACATGAATTATGGACCGGGAGCGGCCATCGGGGAACGGGTCAGATGGCCCGGGTACCGGGTCATCACGTCCACCGTGGAGGCGAAGCGGTTCACGGTGGGGGATTTTATATCGGGCTCGTCGTGGTTGCCGTCGACTGGAGTGGCATTTTTGGCGGGGCTATCCACTTGA 2043 0.5296 MYARLPRIEGMSLEESLSKPCCLQKLVNRRRKYFILAKVPEVLACVPSLLIHIIQPRNYPLISLALTPPNMDFGRIGPSDPGGSSRRSDAPIIAKPSSSLTTSSASNKKKLIFLLVLAVVLIAASAISAVVVIRIRARDSGPSGPDIRGKPTQAISRTCSRTQFPALCVNSLLEFPGSTTASEQELVHISFNMTLQHLNKALYSFTGFSNAQMDPSVRSAYEDCLELLDDSVDALARSLTSVAPSPSDGSIRLGGSTDDVMTWLSAALTNQDTCADGFAEMSGGVKDQMANNLKDLSELLSNCLAIFSTSGAGGGDFAGVPIQNRRRLMGENNADISGEISGNLPKWLSRRDRRLLSLPVPAIQADIVVSQNGNGTVKTITEAIKKAPEHSERRFIIYVTEGRYEEKNLKVGRKKTNLMFIGDGTGKTIITGKRNVVDGLTTFHTASFAATGAGFIARDITFENYAGPSKHQAVALRVGADHAVVYRCDITGYQDTCYVHSNRQFFRECNIYGTVDFIFGNAAVVFQNCSLYARKPMAQQKNTITAQNRKDPNQNTGISIHDCRILAAPDLEPVKGSIPTYLGRPWKLYSRTVYMLSYMGDHIHPRGWLEWNGDFALDTLYYGEYMNYGPGAAIGERVRWPGYRVITSTVEAKRFTVGDFISGSSWLPSTGVAFLAGLST 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1219 680 Gene3D Invertase/pectin methylesterase inhibitor family protein 152 310 IPR035513 -
Dere04g1219 680 FunFam Pectinesterase 151 310 - -
Dere04g1219 680 PANTHER PECTINESTERASE 122 668 - -
Dere04g1219 680 CDD PMEI-like_3 159 308 - -
Dere04g1219 680 ProSitePatterns Pectinesterase signature 2. 511 520 IPR033131 -
Dere04g1219 680 Pfam Pectinesterase 366 663 IPR000070 GO:0030599|GO:0042545
Dere04g1219 680 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 153 308 IPR035513 -
Dere04g1219 680 SMART PMEI_2 150 306 IPR006501 GO:0004857
Dere04g1219 680 SUPERFAMILY Pectin lyase-like 361 677 IPR011050 -
Dere04g1219 680 NCBIfam pectinesterase inhibitor domain 131 308 IPR006501 GO:0004857
Dere04g1219 680 FunFam Pectinesterase 360 678 - -
Dere04g1219 680 Pfam Plant invertase/pectin methylesterase inhibitor 154 306 IPR006501 GO:0004857
Dere04g1219 680 MobiDBLite consensus disorder prediction 75 103 - -
Dere04g1219 680 Gene3D - 360 678 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1219 Dere-ChrDere04 13678098 13682847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1219 71 679 Carbohydrate Esterase AT5G53370 64.542 0.0 810