Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1213 ATGATAATCAAGCGGAACCTGAAATCCCAAATGCCGAGTCTGAAAAGGTGCAAACTGGGTGACTCGGGGGGTGATCGCGATGGCTACTCTGCGGCGCGGAAGAAGAGGAAGACAAACGGATATTATCCATTAAATCTTCTCGGTGATGTCGCTGCCAGTTTAATTCCTGTGAGCTTCCACGGCTTACTTGGTGCTGGTGTGTCTAAGAAAGGCTTTTCTACATCGTGGTGCACCGAAGTCTCGTGCTCTCCTGGTGAAGTGGAGTCAGAGTCGAAGGTTGAAAACTCCGTCAAAGCAAGAATGAATCAGCCGGCGGAGGTTCCGCGGCCGCCGCTCGTCAGGACTTCAAGAGGCCGAGTTCAGGTATTGCCTTCACGTTTCAACGACTCAGTTATCGAGAATTGGAGGAAAGACAGTAAGACTAGCTTGCGCGATTATGGTTTTGAAGATGAACATGAATGTAAAAAGGACAAATTTAATCCTAAGACACCGAAAGCATACAAGCAGAATACAGGAAAGGGGAGAAAAGATGAGAAAGTTGGTCGTAAGTCTCGTAAATATCCGACATTGTGTGAAGAGGAGACAAGAAAAGATGGGTATGTAAGTTACAATGATTTTAACTTGAGAAGCTGTTCGAGTTCACGCAGTACACTCATCGCAAAGCGTGAGCAATTAATTGAAGGTGAAAGACAACGGTTTGTGGATATGGAAGTAGTTGAATTCATGGGCAATGAGGAGCATCTGAAGGAGAACGACCAGAAGAAAGGTAAGATTTATGGACCAGAAGACTTTTACGCAGGTGATATAGTGTGGGCCAAAGCAGGAAAGAACGAGCCCTTTTGGCCGGCCATTATAATTGATCCAATGTCTCAGGCGCCTGAGTTGGTCCTGAGGTCCTGTATCGCCGATGCAGCTTGTGTGATGTTTCTTGGGTACGCTGGGAATGAAAATCAAAGGGACTACGCGTGGGTGAAGCGTGGAATGATTTTTCCATTTATAGATTACGTTGACAGGTTTCAGGGGCAGCGTGAATTGTGTCACTTTAATTCCTCTGATTTCCAAATGGCAATAGAGGAGGCGTTTTTGGCAGATCAAGGATTTACAGAGAGGTTGACAGCTGACATAAATCTAGCAGCTGGTAACACAGGTTATGATGAAACTGTTCTAAAAGACATTCAGGATGTCACTAATTCAGTCCAGTATGCAGGAAATCACTTTCTGAACCAGGATTTATGTGATAAAAAGAAAGACTCACGATCCTGTGAAGTCTGTGGTTTGGGCCTTCCCTTCAAAATGTCAAATAAAATGAATACTTCAAGCCCTGCTGGTCAATATTTATGTAAAACATGTGCTAGGTTGACAAAATCAAAACATTATTGTGGCATATGCAAAAAAATTTGGAATCATTCAGATAGTGGAAGCTGGGTTCGTTGTGACGGATGTAAGGTGTGGGTGCATGCAGAATGCGACAAAATTTCCAGCAACCTTTTTAAGAATCTTGGAGGCACTGATTATTACTGCCCTAGTTGCAAAGCAAAGTTTGATTTTGAATTATCTGATTCAGAAAAATCACAGCCAAAAGTCAAATGGAATAAAAGTAGCGGGCAGCTAGTGCTACCAAACAAGGTGACAGTTGTCTGCAATGGAGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTTTGCAAGTGTGGTTTCTGTGGGACAGAAAAGCAAGCACTTAGCGAATGGGAGCAACACACAGGTTCCAAATCAAGAAATTGGAGAACAAGTGTTAGAGTGAAAGGCTCCATGTTGCCACTGGAACGATGGATGCTGCAGCTGGCGGAATTTCATGAGAATGCTTTAGTTTCTGCCAGACCAAGAAAACCTTCTTTAAAAGAAAGGAAGCAGAAGTTGCTTACCTTTTTGCAAGAGAAGTATGAACCTGTTTATGCTAAGTGGACGACAGAACGGTGTGCTGTATGTAGATGGGTTGAAGATTGGGATTACAACAAAATTATCATTTGCAATAGATGTCAAGTAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCTGACATCAAGCGGGAATGTTGCCTTTGCCCTGTAAAAGGTGGCGCTCTAAAGCCAACTGATGTCGAAACCTTGTGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTGTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTTAGTATTCCATCAAATTCCTTCGTGAAGATCTGTGTCATTTGTAAGCAAATTCATGGTTCATGCACGCAATGTTGCAAGTGTTCCACGTATTTCCATGCCATGTGTGCATCAAGGGCTGGGTATCGCATGGAGTTGCATTGTTTGGAGAAAAATGGTAAACAGACAACGAAAATGGTTTCGTATTGTGCTTACCACAGGGCTCCTAATCCAGACACCGTCTTGGTAATGCAAACCCCTCTTGGGGTTATTTCAACCAAAAATCTTCTCTTAAATAAGAAAAAAGCTGGGTCAAGGTTAATCTCATGTAAGAGAATGAAACTAGATGAAACTCCTCCTGAAGATAACACTGAACCAGAGCCATTCTCTGCTGCCAGATGCCGTGTCTTTCAAAGAACAAATCATACCAAAAAGAGGGCAAAGGATGAAGCCATTCCTCACCGAGTGAAGGGTCACTACCATCATCCTTTAGATACAGTACAGAGGTTAAATGCTTACACGGTGGCAGAGGGGCCTCAAACATTTTCTACTTTTAGGGAACGCCTTTACCACTTGCAGAGAACTGAAAATGAACGGGTATGCTTTGGTAGATCTGGCATACATGGGTGGGGTCTCTTTGCCCGTAGAAGTATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGACGTAGTGTTGCAGATCTGAGGGAGGCACGCTACAGATTAGAAGGCAAAGACTGTTACCTATTCAAGATAAGTGAAGATGTGGTGGTAGATGCCACTGATAAAGGAAATATATCCCGGCTGATTAACCATTCTTGTATGCCAAATTGCTACGCAAGGATCATGAGTGTGGGTGATGATGAAAGCCGGATTGTACTTATTGCTAAGACTAATGTTTCTGCTGGTGATGAGCTAACATATGACTATTTGTTTGATCCTGATGAACCAGATGAATTCAAGGTCCCCTGTTTATGTAAAGCTCCAAATTGCCGGAAATTCATGAATTAA 3261 0.4299 MIIKRNLKSQMPSLKRCKLGDSGGDRDGYSAARKKRKTNGYYPLNLLGDVAASLIPVSFHGLLGAGVSKKGFSTSWCTEVSCSPGEVESESKVENSVKARMNQPAEVPRPPLVRTSRGRVQVLPSRFNDSVIENWRKDSKTSLRDYGFEDEHECKKDKFNPKTPKAYKQNTGKGRKDEKVGRKSRKYPTLCEEETRKDGYVSYNDFNLRSCSSSRSTLIAKREQLIEGERQRFVDMEVVEFMGNEEHLKENDQKKGKIYGPEDFYAGDIVWAKAGKNEPFWPAIIIDPMSQAPELVLRSCIADAACVMFLGYAGNENQRDYAWVKRGMIFPFIDYVDRFQGQRELCHFNSSDFQMAIEEAFLADQGFTERLTADINLAAGNTGYDETVLKDIQDVTNSVQYAGNHFLNQDLCDKKKDSRSCEVCGLGLPFKMSNKMNTSSPAGQYLCKTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLGGTDYYCPSCKAKFDFELSDSEKSQPKVKWNKSSGQLVLPNKVTVVCNGVEGIYFPSLHLVVCKCGFCGTEKQALSEWEQHTGSKSRNWRTSVRVKGSMLPLERWMLQLAEFHENALVSARPRKPSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQVAVHQECYGARNVRDFTSWVCKACETPDIKRECCLCPVKGGALKPTDVETLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGKQTTKMVSYCAYHRAPNPDTVLVMQTPLGVISTKNLLLNKKKAGSRLISCKRMKLDETPPEDNTEPEPFSAARCRVFQRTNHTKKRAKDEAIPHRVKGHYHHPLDTVQRLNAYTVAEGPQTFSTFRERLYHLQRTENERVCFGRSGIHGWGLFARRSIQEGEMVLEYRGEQVRRSVADLREARYRLEGKDCYLFKISEDVVVDATDKGNISRLINHSCMPNCYARIMSVGDDESRIVLIAKTNVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1213 1086 SMART set_7 944 1067 IPR001214 GO:0005515
Dere04g1213 1086 SMART PostSET_3 1070 1086 IPR003616 -
Dere04g1213 1086 CDD SET_SETD1-like 931 1082 - -
Dere04g1213 1086 SMART PHD_3 653 700 IPR001965 -
Dere04g1213 1086 SMART PHD_3 459 511 IPR001965 -
Dere04g1213 1086 SMART PHD_3 764 820 IPR001965 -
Dere04g1213 1086 SUPERFAMILY FYVE/PHD zinc finger 458 514 IPR011011 -
Dere04g1213 1086 Gene3D SET domain 850 1086 IPR046341 -
Dere04g1213 1086 ProSiteProfiles PWWP domain profile. 266 335 IPR000313 -
Dere04g1213 1086 MobiDBLite consensus disorder prediction 155 185 - -
Dere04g1213 1086 FunFam Histone-lysine N-methyltransferase 641 702 - -
Dere04g1213 1086 ProSiteProfiles Extended PHD (ePHD) domain profile. 705 820 IPR034732 -
Dere04g1213 1086 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 822 IPR013083 -
Dere04g1213 1086 SUPERFAMILY Tudor/PWWP/MBT 263 363 - -
Dere04g1213 1086 PANTHER PHD FINGER PROTEINS 61 491 - -
Dere04g1213 1086 Pfam PHD-finger 666 700 - -
Dere04g1213 1086 Pfam PHD-zinc-finger like domain 707 819 - -
Dere04g1213 1086 Gene3D - 261 366 - -
Dere04g1213 1086 MobiDBLite consensus disorder prediction 170 185 - -
Dere04g1213 1086 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 702 IPR013083 -
Dere04g1213 1086 CDD PHD_ATX3_4_5_like 653 699 IPR042011 -
Dere04g1213 1086 SUPERFAMILY FYVE/PHD zinc finger 652 716 IPR011011 -
Dere04g1213 1086 ProSiteProfiles Zinc finger PHD-type profile. 651 702 IPR019787 -
Dere04g1213 1086 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1086 IPR025780 -
Dere04g1213 1086 FunFam Histone-lysine N-methyltransferase 918 1086 - -
Dere04g1213 1086 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 453 515 IPR013083 -
Dere04g1213 1086 ProSiteProfiles Post-SET domain profile. 1070 1086 IPR003616 -
Dere04g1213 1086 CDD PWWP_AtATX3-like 265 369 - -
Dere04g1213 1086 ProSiteProfiles Zinc finger PHD-type profile. 457 513 IPR019787 -
Dere04g1213 1086 SUPERFAMILY SET domain 937 1083 IPR046341 -
Dere04g1213 1086 Pfam PHD-finger 459 512 IPR019787 -
Dere04g1213 1086 FunFam Histone-lysine N-methyltransferase 703 822 - -
Dere04g1213 1086 ProSitePatterns Zinc finger PHD-type signature. 654 699 IPR019786 -
Dere04g1213 1086 ProSiteProfiles SET domain profile. 944 1061 IPR001214 GO:0005515
Dere04g1213 1086 CDD ePHD_ATX3_4_5_like 708 819 IPR041955 -
Dere04g1213 1086 Pfam SET domain 955 1060 IPR001214 GO:0005515
Dere04g1213 1086 MobiDBLite consensus disorder prediction 1 30 - -
Dere04g1213 1086 Pfam PWWP domain 267 360 IPR000313 -
Dere04g1213 1086 CDD PHD_TCF19_like 460 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1213 Dere-ChrDere04 13540040 13549951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g1213 654 819 C2H2 Transcription Factor Family AT3G14740 33.714 5.16e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere04g1213 zf-HC5HC2H_2 5.9e-27 CL0390